Module name | HER2-negative | HER2-positive | Significance of the difference between two changes in expression (HER2−vs HER2+) | ||
---|---|---|---|---|---|
%Δ of geometric mean of intensities of a module of pre- and post-treatment | 2-sided unadjusted p value of paired t test | Geometric mean of intensities of a module of pre- and post-treatment | Unadjusted p value of paired t test | ||
ESR1 | − 23.06 | 1.54E−02 | 18.28 | 6.23E−01 | 9.18E−03 |
ERGs-GS | − 30.79 | 8.58E−14 | − 21.96 | 2.85E−03 | 5.81E−02 |
DiLeoRBloss-GS | − 27.61 | 9.81E−10 | − 30.64 | 1.41E−03 | 5.43E−01 |
JClinInvest2007RBloss-GS | − 26.11 | 5.47E−10 | − 29.45 | 1.78E−03 | 4.72E−01 |
CIN70-GS | − 25.92 | 3.26E−10 | − 28.69 | 1.81E−03 | 5.40E−01 |
E2F4activation-GS | − 25.26 | 4.54E−09 | − 30.07 | 5.02E−03 | 3.13E−01 |
GGI-GS | − 23.67 | 1.78E−09 | − 27.85 | 1.19E−03 | 3.40E−01 |
ERTarget27-GS | − 17.80 | 1.32E−15 | − 11.41 | 3.32E−02 | 1.71E−02 |
E2FmotifCellCycleAssociated-GS | − 16.75 | 5.71E−09 | − 21.72 | 2.00E−03 | 1.31E−01 |
E2Factivation-GS | − 14.45 | 2.25E−07 | − 18.20 | 1.93E−02 | 2.62E−01 |
AURKA-GS | − 13.91 | 1.08E−07 | − 15.45 | 3.94E−03 | 6.10E−01 |
Gene70-GS | − 9.37 | 1.97E−07 | − 12.34 | 6.76E−03 | 1.98E−01 |
SET-GS | − 9.34 | 1.55E−05 | − 2.08 | 5.69E−01 | 8.73E−03 |
PTEN-GS | − 7.55 | 1.44E−06 | − 8.81 | 3.62E−02 | 5.38E−01 |
ESR1.2-GS | − 5.82 | 3.01E−04 | − 0.46 | 8.49E−01 | 1.10E−02 |
ESR1.1-GS | − 5.40 | 2.99E−03 | 0.29 | 9.29E−01 | 1.50E−02 |
MYC-GS | − 4.36 | 1.98E−04 | − 3.54 | 2.24E−01 | 6.02E−01 |
IGF1-GS | − 4.15 | 4.59E−04 | − 4.07 | 7.76E−02 | 9.58E−01 |
VEGF-GS | − 3.85 | 3.33E−02 | − 0.21 | 9.48E−01 | 1.09E−01 |
GDNF-GS | − 3.41 | 1.40E−01 | − 5.23 | 4.25E−01 | 5.71E−01 |
obesity-GS | − 3.08 | 2.40E−02 | − 1.72 | 5.64E−01 | 4.55E−01 |
E2F3-GS | − 2.89 | 5.01E−05 | − 3.79 | 2.62E−02 | 3.45E−01 |
PI3K-GS | − 1.80 | 3.19E−03 | − 3.11 | 6.69E−02 | 1.23E−01 |
SRC-GS | − 1.69 | 2.83E−01 | − 1.62 | 6.46E−01 | 9.74E−01 |
AKT/mTOR-GS | − 1.62 | 4.57E−02 | − 1.95 | 3.31E−01 | 7.51E−01 |
RAS-GS | − 1.47 | 1.93E−01 | − 0.47 | 8.51E−01 | 5.04E−01 |
BetaCatenin-GS | − 1.28 | 3.83E−01 | 0.04 | 9.91E−01 | 5.07E−01 |
WntTarget34-GS | − 0.30 | 8.90E−01 | − 2.56 | 6.50E−01 | 4.28E−01 |
ERBB2-GS | 0.27 | 8.88E−01 | − 0.88 | 8.60E−01 | 6.55E−01 |
PIK3CA-GS | 0.39 | 7.20E−01 | 1.77 | 3.99E−01 | 3.42E−01 |
STAT1-GS | 0.79 | 8.27E−01 | − 7.73 | 2.98E−01 | 6.99E−02 |
CASP3-GS | 1.37 | 5.57E−01 | − 1.18 | 8.48E−01 | 3.82E−01 |
Bcell-GS | 1.71 | 6.92E−01 | − 7.38 | 3.51E−01 | 7.71E−02 |
MacTh1-GS | 2.72 | 4.94E−01 | 0.20 | 9.79E−01 | 6.38E−01 |
Tcell-GS | 2.83 | 5.38E−01 | − 6.13 | 4.73E−01 | 1.12E−01 |
Inflammatory-GS | 2.86 | 4.92E−01 | − 4.80 | 5.15E−01 | 1.55E−01 |
Immune.1-GS | 3.07 | 5.24E−01 | − 5.34 | 6.10E−01 | 1.49E−01 |
MAPK-GS | 3.21 | 6.59E−03 | 1.94 | 5.02E−01 | 4.22E−01 |
Stroma.2.PLAU-GS | 6.57 | 4.65E−02 | 4.54 | 5.14E−01 | 6.34E−01 |
Stroma.1-GS | 20.71 | 1.17E−02 | 21.87 | 1.61E−01 | 9.18E−01 |
TP53-GS | 29.90 | 6.45E−10 | 29.38 | 5.59E−03 | 9.44E−01 |
PAGs | − 4.40 | 6.44E−06 | − 6.23 | 2.06E−02 | 1.37E−01 |