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Table 2 Representative SNPs and association statistics from each of four different SNP clusters/regions that are genome-wide significant

From: Identification of novel common breast cancer risk variants at the 6q25 locus among Latinas

SNP/risk allele Allele frequency Position
(BP, Hg19)
Odds ratio
(95% CI)
P value Conditional OR*
P value
Joint OR**
P value
rs140068132-G 0.0933 6:151954834 0.58 (0.50–0.66) 4.4 × 10− 15   0.61 (0.53–0.71) 6.8 × 10− 12
rs851980-C 0.255 6:152027955 1.28 (1.18–1.35) 5.2 × 10−10 1.22 (1.12–1.32) 1.0 × 10− 6 1.19 (1.10–1.28) 3 × 10− 6
rs3778609-T 0.192 6:152133187 0.76 (0.69–0.83) 6.0 × 10−9 0.84 (0.76–0.93) 6.5 × 10− 4 0.86 (0.78–0.95) 0.0035
  1. *Conditional on rs140068132
  2. **Joint model with rs140068132, rs851985, and rs3778609