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Table 1 Candidate genes identified and corresponding breast cancer risk single-nucleotide polymorphisms
| SNP | GWAS proposed candidates | Neighbouring genes ± 500 kb | SNP | GWAS proposed candidates | Neighbouring genes ± 500 kb |
|---|---|---|---|---|---|
| rs7726159 | TERT | – | rs2016394 | – | DLX2 |
| rs10069690 | TERT | – | rs1550623 | CDCA7 | – |
| rs2736108 | TERT | – | rs6762644 | – | SETMAR; ITPR1 |
| rs2588809 | RAD51B | – | rs12493607 | TGFBR2 | – |
| rs999737 | RAD51B | – | rs9790517 | TET2 | – |
| rs10759243 | – | RAD23B | rs6828523 | ADAM29 | – |
| rs2981579 | FGFR2 | – | rs1353747 | PDE4D | – |
| rs11199914 | – | FGFR2 | rs1432679 | EBF1 | – |
| rs7072776 | DNAJC1 | – | rs204247 | RANBP9 | – |
| rs11814448 | DNAJC1 | – | rs720475 | – | TPK1 |
| rs13387042 | – | TNP1 | rs6472903 | – | HNF4G |
| rs11552449 | – | DCLRE1B | rs2943559 | HNF4G | – |
| rs1045485 | CASP8 | – | rs7904519 | TCF7L2 | – |
| rs4973768 | SLC4A7 | – | rs3903072 | – | KAT5; SNX32; MUS81 |
| rs889312 | MAP3K1 | – | rs11820646 | – | NFRKB |
| rs12662670 | ESR1 | – | rs2236007 | PAX9 | – |
| rs2046210 | ESR1 | – | rs941764 | CCDC88C | – |
| rs1011970 | CDKN2A; CDKN2B | – | rs17817449 | FTO | – |
| rs704010 | ZMIZ1 | – | rs13329835 | CDYL2 | – |
| rs3817198 | LSP1 | – | rs527616 | – | CHST9 |
| rs10771399 | PTHLH | – | rs1436904 | CHST9 | – |
| rs3803662 | TOX3 | – | rs4808801 | ELL | – |
| rs6504950 | COX11 | – | rs3760982 | – | XRCC1; KCNN4; ZNF283; ZNF226 |
| rs8170 | – | USHBP1; BABAM1; UNC13A | rs132390 | – | EMID1; NF2 |
| rs2363956 | – | USHBP1; BABAM1; UNC13A | rs6001930 | MKL1 | – |
| rs2823093 | NRIP1 | – | rs4245739 | MDM4 | – |
| rs616488 | PEX14 | – | rs6678914 | LGR6 | – |
| rs4849887 | – | EPB41L5 | rs11075995 | FTO | – |
