Table 2 Sequence analysis of isolated, hypomethylated bands
Cell line/band | Band size | Location | BLAST homology (region) | Gene(s) | Details | Tissue/tumour type |
|---|---|---|---|---|---|---|
MCF-7 | ||||||
1 | 395 | 7p14.3 | RP11-162O1 (61998-61604) | None | NA | NA |
2 | 297 | 2p24.1 | RP11-414D15 (178657-178361) | BC013982, AL834515 | mRNA (UP) | Choriocarcinoma, melanoma |
3 | 183 | 9q34.3 | RP11-413M3 (36274-36092) | AF032387 | snRNA activating protein | Foetal cell teratocarcinoma |
4 | 107 | 21q22.1 | AP001713 (9409-9303) | None | NA | NA |
HCC1806 | ||||||
5 | 481 | 9q31.2 | RP11-438P9 (61700-61218) | MIRb | SINE repeat | NA |
6 | 297 | 2p24.1 | RP11-414D15 (178657-178361) | BC013982, AL834515 | mRNA (UP) | Choriocarcinoma, melanoma |
7 | 197 | 11q13.3 | RP11-211G23 (138454-138261) | None | NA | NA |
MDA-MB 231 | ||||||
8 | 183 | 9q34.3 | RP11-413M3 (36274-36092) | AF032387 | snRNA activating protein | Foetal cell teratocarcinoma |
9 | 156 | 11q13 | CTD-3074O7 (121538-121383) | M86407, AK125851 | α-actinin 3 | Foetal skeletal muscle |
10 | 122 | 10q26 | RP13-137A17 (59898-60011) | None | NA | NA |
MDA-MB 468 | ||||||
11 | 183 | 9q34.3 | RP11-413M3 (36274-36092) | AF032387 | snRNA activating protein | Foetal cell teratocarcinoma |
12 | 156 | 11q13 | CTD-3074O7 (121538-121383) | M86407, AK125851 | α-actinin 3 | Foetal skeletal muscle |