Table 2 SAM (significance analysis of microarrays) analysis of genes correlated to percentage tumour content.
Gene name | Genbank accession | Unigene cluster ID | Symbol | Score (d) | q-value (%) |
|---|---|---|---|---|---|
ADP-ribosylation factor 1 | AK023803 | Hs.286221 | ARF1 | 3.11 | 4.13 |
CDC28 protein kinase regulatory subunit 2 | BQ898943 | Hs.83758 | CKS2 | 2.73 | 4.13 |
TRK-fused gene | NM_006070 | Hs.446568 | TFG | 2.65 | 4.13 |
Discs, large homolog 7 (Drosophila) | NM_014750 | Hs.77695 | DLG7 | 2.60 | 4.13 |
RAB6B, member RAS oncogene family | NM_016577 | Hs.352530 | RAB6B | 2.59 | 4.13 |
Epithelial cell transforming sequence 2 oncogene | AY376439 | Hs.293257 | ECT2 | 2.56 | 4.13 |
FXYD domain containing ion transport regulator 2 | CR627143 | Hs.413137 | FXYD2 | 2.54 | 4.13 |
Ubiquitin specific protease 9, X-linked (fat facets-like, Drosophila) | NM_004652 | Hs.77578 | USP9X | 2.48 | 4.13 |
Pitrilysin metalloproteinase 1 | CR749279 | Hs.528300 | PITRM1 | 2.46 | 4.13 |
Myeloid differentiation primary response gene (88) | AK124685 | Hs.82116 | MYD88 | 2.44 | 4.13 |
Baculoviral IAP repeat-containing 5 (survivin) | NM_001012271 | Hs.1578 | BIRC5 | 2.42 | 4.13 |
Polo-like kinase 4 (Drosophila) | NM_014264 | Hs.172052 | PLK4 | 2.40 | 4.13 |
2',3'-cyclic nucleotide 3' phosphodiesterase | NM_033133 | Hs.443836 | CNP | 2.40 | 4.13 |
Triosephosphate isomerase 1 | BM913099 | Hs.83848 | TPI1 | 2.39 | 4.13 |
ALL1-fused gene from chromosome 1q | BX649117 | Hs.75823 | AF1Q | 2.37 | 4.13 |
Latent transforming growth factor beta binding protein 2 | NM_000428 | Hs.105689 | LTBP2 | -3.49 | 1.00 |
LIM domain binding 2 | AL832772 | Hs.4980 | LDB2 | -3.43 | 1.00 |
Collagen, type XV, alpha 1 | NM_001855 | Hs.409034 | COL15A1 | -3.39 | 1.00 |
Cadherin 5, type 2, VE-cadherin (vascular epithelium) | NM_001795 | Hs.76206 | CDH5 | -3.39 | 1.00 |
Forkhead box O1A (rhabdomyosarcoma) | NM_002015 | Hs.170133 | FOXO1A | -3.17 | 1.00 |
TEK tyrosine kinase, endothelial (venous malformations, multiple cutaneous) | BC035514 | Hs.89640 | TEK | -3.02 | 1.00 |
Regulator of G-protein signaling 5 | NM_003617 | Hs.24950 | RGS5 | -2.97 | 1.00 |
Fasciculation and elongation protein zeta 1 (zygin I) | NM_022549 | Hs.79226 | FEZ1 | -2.90 | 1.00 |
Vascular endothelial growth factor C | NM_005429 | Hs.79141 | VEGFC | -2.90 | 1.00 |
Tumor necrosis factor receptor superfamily, member 10c, decoy without an intracellular domain | NM_003841 | Hs.253829 | TNFRSF10C | -2.82 | 1.00 |
CDNA FLJ25106 fis, clone CBR01467 | AK128814 | Hs.432914 | Â | -2.79 | 1.00 |
Alpha-2-macroglobulin | CR749334 | Hs.74561 | A2M | -2.77 | 1.00 |
Meis1, myeloid ecotropic viral integration site 1 homolog 2 (mouse) | NM_170677 | Hs.362805 | MEIS2 | -2.71 | 1.00 |
Tropomodulin 1 | AK096156 | Hs.404289 | TMOD1 | -2.70 | 1.00 |
Isoleucine-tRNA synthetase | NM_013417 | Hs.172801 | IARS | -2.63 | 1.00 |