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Table 4 Description of loci identified as potential susceptibility sites by ALTree a

From: An original phylogenetic approach identified mitochondrial haplogroup T1a1 as inversely associated with breast cancer risk in BRCA2 mutation carriers

Site

SNP name

Position

Direction of change

Correlated evolution index

Major allele

Minor allele

MAF in pop2

44

MitoT9900C

9,899

T → C

0.390

T

C

0.016

57

rs41544217

11,812

G → A

0.324

A

G

0.071

72

rs28359178

13,708

G → A

0.318

G

A

0.111

  1. aMAF, Mean allele frequency; pop2, BRCA2 mutation carrier.
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Breast Cancer Research

ISSN: 1465-542X

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