Table 2 Differentially expressed genes on regions with differential copy number
From: Breast tumors from CHEK2 1100delC- mutation carriers: genomic landscape and clinical implications
Gene symbol | GEX: fold change | GEX: P value | Region | aCGH: gain/loss |
|---|---|---|---|---|
CLCA1 | 1.8178 | 0.000007 | chr1 | Loss |
DPH5 | 0.8254 | 0.0049 | chr1 | Loss |
C1orf62 | 1.3277 | 0.0057 | chr1 | Loss |
ATXN7L2 | 1.2804 | 0.007 | chr1 | Loss |
DR1 | 0.8474 | 0.0108 | chr1 | Loss |
TMED5 | 0.8728 | 0.0145 | chr1 | Loss |
ALG14 | 0.8640 | 0.0389 | chr1 | Loss |
LRRC8D | 0.8854 | 0.0433 | chr1 | Loss |
DEFA5 | 1.1076 | 0.0113 | chr8 | Loss |
DUSP4 | 1.2724 | 0.0426 | chr8 | Loss |
OR6C3 | 1.2558 | 0.0016 | chr12 | Gain |
CALCOCO1 | 1.2579 | 0.0016 | chr12 | Gain |
SBEM | 3.0936 | 0.0217 | chr12 | Gain |
OR6C2 | 1.1820 | 0.0485 | chr12 | Gain |
LRP1 | 0.8171 | 0.0011 | chr12 | Gain |
OR10AD1 | 1.2648 | 0.0061 | chr12 | Gain |
CSAD | 1.2758 | 0.0067 | chr12 | Gain |
C12orf10 | 0.8867 | 0.0122 | chr12 | Gain |
MYO1A | 0.7468 | 0.0131 | chr12 | Gain |
LALBA | 1.2369 | 0.0187 | chr12 | Gain |
ITGA7 | 1.2531 | 0.0201 | chr12 | Gain |
OR9K2 | 1.4794 | 0.0231 | chr12 | Gain |
KRT5 | 1.7237 | 0.0382 | chr12 | Gain |
FAM112B | 0.7840 | 0.0426 | chr12 | Gain |
SMARCC2 | 1.1788 | 0.047 | chr12 | Gain |
KIAA1924 | 0.8549 | 0.0156 | chr16 | Gain |
NTHL1 | 0.8410 | 0.0233 | chr16 | Gain |
KIAA1171 | 1.1890 | 0.0348 | chr16 | Gain |