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Table 1 Top 50 differentially expressed RNAs (using RankP)

From: A matrisome RNA signature from early-pregnancy mouse mammary fibroblasts predicts distant metastasis-free breast cancer survival in humans

Probe_ID Gene symbol p-values Fold change Preg/Ctrl Median Preg Median Ctrl
ILMN_2766542 Grlf1 0.0001 5.57 571.11 102.54
ILMN_1241214 Myh4 0.0001 5.05 293.53 58.09
ILMN_2487824 Alx4 0.0001 4.23 666.18 157.52
ILMN_2635784 Gpc1 0.0001 3.74 744.07 199.17
ILMN_2936517 Bcl2l2 0.0002 4.74 749.98 158.23
ILMN_1239430 Mrc1 0.0002 3.25 331.29 101.97
ILMN_2647028 Copz2 0.0002 2.84 729.06 256.57
ILMN_2930819 Acd 0.0003 3.20 1064.86 333.05
ILMN_1247540 Vcan 0.0003 3.10 435.82 140.46
ILMN_2945275 Rbm15 0.0005 2.84 427.28 150.19
ILMN_2636443 Bcl2l2 0.0006 3.49 857.62 245.92
ILMN_2709782 Mtap2 0.0008 3.98 205.62 51.69
ILMN_1258929 2610110G12RIK 0.0008 3.60 214.99 59.71
ILMN_1230753 B230399E16RIK 0.0008 3.32 575.35 173.35
ILMN_1249517 Tmem168 0.0010 3.53 225.91 64.01
ILMN_2683802 Nudt9 0.0010 2.69 203.48 75.67
ILMN_1237186 Spint1 0.0011 2.67 152.09 57.02
ILMN_1238360 LOC100042405 0.0011 2.41 941.65 390.74
ILMN_1246127 Prss23 0.0013 2.34 483.67 206.61
ILMN_2678002 Notch2 0.0015 2.66 227.93 85.71
ILMN_2463181 Tnc 0.0016 2.38 317.34 133.06
ILMN_2723024 BC004044 0.0016 2.28 168.75 74.1
ILMN_2878274 Copz2 0.0017 2.18 604.97 277.56
ILMN_2840818 Cmpk 0.0018 2.52 970.31 384.49
ILMN_1226553 Mtap2 0.0020 3.65 154.53 42.28
ILMN_1237216 LOC100047827 0.0020 2.14 831.45 388.45
ILMN_2697020 Bat2d 0.0021 2.12 503.2 237.3
ILMN_2670344 Lrrn2 0.0022 2.26 139.51 61.62
ILMN_2486906 Wisp2 0.0001 − 3.31 140.62 466.12
ILMN_2597606 Gjc2 0.0002 − 3.75 66.05 247.37
ILMN_2684370 Igk-c 0.0002 − 4.42 57.87 255.67
ILMN_1243031 Trrp1 0.0006 − 2.33 51.06 118.96
ILMN_1236368 Orai1 0.0007 − 2.11 79.89 168.37
ILMN_1232263 Kcnk5 0.0009 − 2.33 255.3 594.28
ILMN_1231553 Bdh1 0.0009 − 2.86 49.33 141.27
ILMN_2756435 Cebpb 0.0011 − 2.56 705.42 1802.36
ILMN_2906489 Mocos 0.0011 − 2.65 149.61 396.1
ILMN_2704562 LOC100047628 0.0011 − 4.67 58.56 273.36
ILMN_2968907 Tipin 0.0012 − 2.32 164.69 381.45
ILMN_3099265 Anapc11 0.0013 − 3.42 60.7 207.32
ILMN_2686327 Gas6 0.0014 − 1.63 704.55 1151.77
ILMN_1240289 BC023744 0.0014 − 2.07 138 286.23
ILMN_2760019 Cxcl13 0.0015 − 2.70 99.75 269.81
ILMN_2907214 Tcea3 0.0016 − 2.27 75.55 171.15
ILMN_2687794 Tbx15 0.0016 − 2.32 307.36 714.05
ILMN_1239386 Galntl2 0.0016 − 2.52 115.11 290.55
ILMN_1246999 LOC677205 0.0018 − 2.04 194.58 396.1
ILMN_1232824 D430003P20RIK 0.0018 − 2.82 199.47 562.53
ILMN_2601020 Cnot10 0.0021 − 2.32 144.9 335.67
ILMN_2890935 Avpr1a 0.0021 − 3.19 121.21 386.73
  1. The table shows the top 50 hits (Probe ID) of RNAs that show significant (p < 0.05) differential expression (Fold-change) in fibroblast from 3-days pregnant (Preg) compared to virgin control (Crtl) mice, using median signal intensities from 3 individual experiments (biological replicates) and RankP software [18]. Probes have been ranked by decreasing fold-change and increasing p-value