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Table 1 List of Top 20 differential expression of immune transcripts in 1E6 versus the autochthonous model

From: Comparing syngeneic and autochthonous models of breast cancer to identify tumor immune components that correlate with response to immunotherapy in breast cancer

Transcript

Gene Sets

Probe ID

Log2 fold change

P-value

Tfrc-mRNA

CD molecules, Transporter Functions

NM_011638.3:1930

1.52

9.64E-09

Birc5-mRNA

Apoptosis, Cell Cycle, Cytokines & Receptors

NM_009689.2:237

1.68

3.66E-08

Psma2-mRNA

Cancer Progression

NM_008944.2:136

0.26

9.74E-07

Runx1-mRNA

 

NM_001111021.1:3055

-1.13

1.38E-06

Il1rap-mRNA

Cytokines & Receptors, Inflammation, Innate, Interleukins

NM_008364.2:2415

0.96

1.70E-06

Hif1a-mRNA

Apoptosis, Cancer Progression

NM_010431.2:1294

0.53

1.94E-06

Nt5e-mRNA

B-Cell Functions, CD molecules, Inflammation

NM_011851.3:1600

1.54

5.90E-06

Oas2-mRNA

Basic Cell Functions

NM_145227.3:414

4.07

7.48E-06

Fcgr2b-mRNA

Antigen Processing, B-Cell Functions, CD molecules, Inflammation, Interleukins, MHC, Transporter Functions

NM_001077189.1:1225

2.38

7.55E-06

Ltbr-mRNA

Apoptosis, TNF Superfamily

NM_010736.3:1962

0.27

8.11E-06

Saa1-mRNA

Adhesion, Cytokines & Receptors, Innate, Macrophage Functions

NM_009117.3:351

-2.47

8.41E-06

Smn1-mRNA

Cancer Progression

NM_011420.2:390

0.24

9.88E-06

Itgb4-mRNA

Adhesion, CD molecules

NM_001005608.2:3355

1.26

1.04E-05

Bax-mRNA

Apoptosis, Transporter Functions

NM_007527.3:735

0.57

1.24E-05

Bst2-mRNA

CD molecules, Humoral, Innate

NM_198095.2:468

2.4

1.28E-05

Igf2r-mRNA

Apoptosis, CD molecules, Transporter Functions

NM_010515.1:2585

0.72

1.30E-05

Traf3-mRNA

Apoptosis, Cytokines & Receptors, Innate, TLR

NM_001048206.1:6385

0.53

2.45E-05

Ikzf2-mRNA

T cell Functions

NM_011770.4:7230

1.22

2.52E-05

Ddx58-mRNA

Innate, Interferon

NM_172689.3:1751

1.32

3.00E-05

Ccl27a-mRNA

Cytokines & Receptors

NM_001048179.1:265

-0.79

3.15E-05