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Table 5 Correlation of real-time RT-PCR and microarray results

From: Genomic signature of parity in the breast of premenopausal women

Genes Affymetrix probeset TaqMan Assay ID Microarray Real time ICC Spearman correlation
FC P FC P
WIF1 204712_at Hs00183662_m1 0.39 0.055 0.32 0.034 0.92 0.94
FOXQ1 227475_at Hs00536425_s1 0.64 0.020 0.70 0.218 0.64 0.69
FZD8 227405_s_at Hs00259040_s1 1.3 0.003 1.17 0.188 0.43 0.42
SDC1 201286_at Hs00896423_m1 1.48 0.014 1.19 0.456 0.73 0.62
EAF2 219551_at Hs00218407_m1 1.36 0.008 1.24 0.059 0.35 0.41
BHLHE22 228636_at Hs01084964_s1 1.24 0.078 1.35 0.022 0.41 0.53
APOBEC3G 204205_at Hs00222415_m1 1.44 0.000 1.44 0.001 0.39 0.48
DSC3 206033_s_at Hs00170032_m1 1.70 0.002 1.45 0.063 0.64 0.51
KRT5 201820_at Hs00361185_m1 1.51 0.012 1.54 0.062 0.64 0.71
EGR3 206115_at Hs00231780_m1 1.71 0.026 1.57 0.072 0.76 0.70
RASGRP1 205590_at Hs00996727_m1 1.61 0.002 1.71 0.002 0.66 0.74
  1. Correlation of real-time RT-PCR and microarray results were calculated using the 20 parous vs. 17 nulliparous samples, for whom enough RNA material was still available. FC mean fold change, P batch-adjusted p value, ICC intraclass correlation coefficient