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Table 3 Genes that enriched developmental processes and immune response gene ontologies

From: Genomic signature of parity in the breast of premenopausal women

Transient genes

 Developmental process

  ANXA1

CAMK4

CD8A

CD27

EOMES

ITK

  JAK3

LCK

PTPN22

PTPRC

SASH3

THEMIS

 Immune response

  ANXA1

CAMK4

CCL5

CD8A

CD27

CD48

  CD96

CD247

CORO1A

CST7

CXCL14

CXCL9

  EOMES

FASLG

FYB

GZMA

HCST

IGLC1

  IKZF1

IL16

IL7R

ITGAL

ITK

JAK3

  KLHL6

LAT

LAX1

LCK

LCP2

LY9

  PRKCB

PTPN22

PTPRC

SASH3

SELPLG

SEMA4D

  sSH2D1A

SLAMF1

THEMIS

TRAC

XCL1

 

Long-term changing genes

 Developmental process

  C3

CCR2

CD2

CXCL10

DACT1

DKK3

  EAF2

EPHA7

FGF1

FGFR2

HCLS1

HLA-DOA

  IL12RB1

IRF4

LAMA2

OSR2

PDGFRA

SIPA1L1

  SPHK1

     

 Immune response

  APOBEC3G

BLNK

C1S

C3

CCR2

CD2

  CD3D

CD38

CRTAM

CXCL10

GPR183

HLA-DOA

  HLA-DPB1

IGKC

IL12RB1

IRF4

LPXN

MZB1

  NFATC2

PAWR

POU2AF1

PRKCQ

SAMSN1

SLAMF7

  TRBC1

     

Long-term constant genes

 Developmental process

  BHLHE22

CCL19

CCL2

DCN

DSC3

EGR3

  EPHB1

FHL2

FZD8

GLI3

GPR65

KCNMA1

  KIF5C

KRT5

MYLK

NFASC

PRKCA

SALL1

  SDC1

SULF1

SULF2

TAGLN

TREM2

TYMS

  VCAM1

WIPF3

XDH

ZIC1

  

 Immune response

  CCL2

CCL19

GLI3

HLA-DPA1

HLA-DRA

VCAM1

  1. Italicized genes enriched both developmental and immune response processes