From: Circulating cell-free DNA-based epigenetic assay can detect early breast cancer
Gene | Name | Product length | Chr | CpG |
---|---|---|---|---|
Common BC markers | ||||
  JAK3 | Tyrosine-protein kinase JAK3 | 129 | 19 | s-shore |
  RASGRF1 | Ras-specific guanine nucleotide-releasing factor 1 | 104 | 15 | island |
  CPXM1 | Carboxypeptidase X1 | 94 | 20 | island |
  SHF | Src homology 2 domain-containing adapter protein F | 117 | 15 | island |
Luminal-dominant markers | ||||
  DNM3 | Dynamin 3 | 105 | 19 | n-shore |
  CAV2 | Caveolin 2 | 141 | 7 | island |
  HOXA10 | Homeobox protein Hox-A10 | 135 | 7 | island |
  B3GNT5 | UDP-GlcNAc:betaGal beta-1,3-N acetylglucosaminyltransferase 5 | 97 | 3 | island |
TN-dominant markers | ||||
  ST3GAL6 | ST3 beta-galactoside alpha-2,3-sialyltransferase 6 | 82 | 3 | s-shore |
  DACH1 | Dachshund homolog 1 | 110 | 13 | n-shore |
  P2RX3 | P2X purinoceptor 3 | 118 | 11 | island |
 Chr8:23572595 | Intergenic locus corresponding to probe cg23495581, located at chr 8: 23,572,595 in GRCh37 | 83 | 8 | s-shore |
Internal control markers for MSP | ||||
  CREM | cAMP-responsive element modulator | 75 | 10 |  |
  GLYATL3 | Glycine N-acyltransferase-like protein 3 | 107 | 6 |  |
  ELMOD3 | ELMO/CED-12 domain containing 3 | 90 | 2 |  |
  KLF9 | Kruppel-like factor 9 | 89 | 9 |  |