Table 1 Summary of all TCGA RNA-sequencing samples used in analysis
From: ELF5 isoform expression is tissue-specific and significantly altered in cancer
| Tissue | Cancer type | TCGA acronym | Normal samplesa | Cancer samples |
|---|---|---|---|---|
| Bladder | Bladder urothelial carcinoma | BLCA | 19 | 241 |
| Breast | Breast invasive carcinoma | BRCA | 59b | 515 |
| Luminal A | 229 | |||
| Luminal B | 126 | |||
| HER2 | 57 | |||
| Basal-like | 96 | |||
| Normal-like | 7 | |||
| Cervix | Cervical squamous cell carcinoma and endocervical adenocarcinoma | CESC | 3 | 185 |
| Colon | Colon adenocarcinoma | COAD | 41 | 261 |
| Head/neck (including mouth and throat) | Head and neck squamous cell carcinoma | HNSC | 43 | 497 |
| Kidney | Chromophobe | KICH | 25 | 66 |
| Clear cell carcinoma | KIRC | 72 | 518 | |
| Papillary cell carcinoma | KIRP | 30 | 172 | |
| Liver | Hepatocellular carcinoma | LIHC | 50 | 191 |
| Lung | Lung adenocarcinoma | LUAD | 58 | 488 |
| Lung squamous cell carcinoma | LUSC | 50 | 490 | |
| Pancreas | Pancreatic adenocarcinoma | PAAD | 3 | 85 |
| Prostate | Prostate adenocarcinoma | PRAD | 50 | 297 |
| Rectum | Rectum adenocarcinoma | READ | 9 | 91 |
| Thyroid | Thyroid carcinoma | THCA | 59 | 498 |
| Uterus | Uterine corpus endometrial carcinoma | UCEC | 24 | 158 |
| Uterine carcinosarcoma | UCS | NAc | 57 | |
| Adrenal gland | Adrenocortical carcinoma | ACC | NA | 79 |
| Hematological | Diffuse large B-cell lymphoma | DLBC | NA | 28 |
| Acute myeloid leukemia | LAML | 173 | ||
| Brain | Glioblastoma multiforme | GBM | NA | 156 |
| Lower grade glioma | LGG | 463 | ||
| Ovary | Ovarian serous cystadenocarcinoma | OV | NA | 262 |
| Skin | Cutaneous melanoma | SKCM | NA | 82 |
| Bone/connective tissue/soft tissue | Sarcoma | SARC | NA | 103 |