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Table 1 Summary of all TCGA RNA-sequencing samples used in analysis

From: ELF5 isoform expression is tissue-specific and significantly altered in cancer

Tissue Cancer type TCGA acronym Normal samplesa Cancer samples
Bladder Bladder urothelial carcinoma BLCA 19 241
Breast Breast invasive carcinoma BRCA 59b 515
   Luminal A 229
   Luminal B 126
   HER2 57
   Basal-like 96
   Normal-like 7
Cervix Cervical squamous cell carcinoma and endocervical adenocarcinoma CESC 3 185
Colon Colon adenocarcinoma COAD 41 261
Head/neck (including mouth and throat) Head and neck squamous cell carcinoma HNSC 43 497
Kidney Chromophobe KICH 25 66
  Clear cell carcinoma KIRC 72 518
  Papillary cell carcinoma KIRP 30 172
Liver Hepatocellular carcinoma LIHC 50 191
Lung Lung adenocarcinoma LUAD 58 488
  Lung squamous cell carcinoma LUSC 50 490
Pancreas Pancreatic adenocarcinoma PAAD 3 85
Prostate Prostate adenocarcinoma PRAD 50 297
Rectum Rectum adenocarcinoma READ 9 91
Thyroid Thyroid carcinoma THCA 59 498
Uterus Uterine corpus endometrial carcinoma UCEC 24 158
  Uterine carcinosarcoma UCS NAc 57
Adrenal gland Adrenocortical carcinoma ACC NA 79
Hematological Diffuse large B-cell lymphoma DLBC NA 28
  Acute myeloid leukemia LAML   173
Brain Glioblastoma multiforme GBM NA 156
  Lower grade glioma LGG   463
Ovary Ovarian serous cystadenocarcinoma OV NA 262
Skin Cutaneous melanoma SKCM NA 82
Bone/connective tissue/soft tissue Sarcoma SARC NA 103
  1. TCGA The Cancer Genome Atlas
  2. aNormal samples included where n ≥ 3
  3. b65 samples included in differential expression analysis
  4. cUterine corpus endometrioid carcinoma normal samples used as normal uterine samples for differential expression analysis