Table 2 Expression of top 69 MaSC signature genes expressed >2.5 fold higher and <5% FDR relative to expression in both myoepithelial and luminal cells, ordered by gene symbol
From: Mouse mammary stem cells express prognostic markers for triple-negative breast cancer
| Â | Relative to myoepithelial expression | Relative to luminal expression | ||
|---|---|---|---|---|
Gene symbol | Fold change | FDR (%) | Fold change | FDR (%) |
4933439F18Rik | 2.60 | 2.44 | 4.93 | 0 |
Adam12 | 5.40 | 2.45 | 2.77 | 0 |
Bcor | 2.77 | 3.37 | 2.87 | 0 |
Bptf | 3.98 | 3.49 | 7.57 | 0 |
Ccnd2 | 2.83 | 3.49 | 8.89 | 0 |
Cdk5rap2 | 2.64 | 0.58 | 3.33 | 0 |
Cdkl2 | 2.66 | 1.75 | 2.86 | 0 |
Col12a1 | 3.76 | 2.85 | 4.18 | 0 |
Col17a1 | 6.72 | 3.49 | 2.51 | 0 |
Col5a2 | 2.97 | 0.58 | 3.55 | 0 |
Dab2 | 3.53 | 3.49 | 2.51 | 0 |
Depdc6 | 2.63 | 2.25 | 3.88 | 0 |
Diap2 | 2.54 | 2.85 | 2.97 | 0 |
Dlc1 | 2.54 | 3.37 | 5.57 | 0 |
Dpysl3 | 2.68 | 3.49 | 4.92 | 0 |
Eif2ak2 | 2.75 | 2.85 | 2.83 | 0 |
Elk3 | 2.68 | 3.49 | 3.26 | 0 |
Erg | 2.64 | 2.85 | 2.55 | 0 |
Fabp4 | 3.59 | 2.44 | 2.50 | 0 |
Filip1 | 2.55 | 4.30 | 2.68 | 0 |
Gfra2 | 3.21 | 0.37 | 10.55 | 0 |
Gltscr2 | 2.51 | 3.49 | 2.71 | 0 |
Gpatch4 | 2.63 | 3.90 | 3.28 | 0 |
Grik3 | 3.29 | 0.96 | 4.53 | 0 |
Gsn | 2.73 | 2.44 | 2.98 | 0 |
Htr1d | 2.78 | 2.02 | 5.85 | 0 |
Ift57 | 2.90 | 0.00 | 3.18 | 0 |
Kank2 | 3.19 | 1.59 | 4.23 | 0 |
Kif26b | 4.02 | 0.00 | 3.64 | 0 |
Krt15 | 3.38 | 1.75 | 3.15 | 0 |
Lgals1 | 3.01 | 0.00 | 6.39 | 0 |
Lgr5 | 7.76 | 0.00 | 2.94 | 0 |
Ltbp2 | 2.87 | 0.00 | 6.94 | 0 |
Mllt3 | 2.88 | 2.06 | 5.10 | 0 |
Mme | 3.17 | 1.59 | 4.29 | 0 |
Mtap1b | 6.74 | 2.08 | 3.64 | 0 |
Mybl1 | 3.05 | 2.06 | 3.17 | 0 |
Nf2 | 3.14 | 3.37 | 3.46 | 0 |
Nfatc2 | 2.81 | 1.54 | 6.35 | 0 |
Ngfr | 2.95 | 3.49 | 3.16 | 0 |
Nkain2 | 3.14 | 2.23 | 3.78 | 0 |
Nox4 | 5.04 | 0.58 | 2.69 | 0 |
Ogn | 5.79 | 1.71 | 2.68 | 0 |
Pcdh7 | 2.68 | 3.49 | 5.51 | 0 |
Pdcd6ip | 2.93 | 2.85 | 3.77 | 0 |
Plcb1 | 2.87 | 1.10 | 2.72 | 0 |
Ppp1r14a | 2.61 | 3.49 | 3.14 | 0 |
Rarres2 | 2.90 | 2.06 | 2.87 | 0 |
Rpf2 | 3.95 | 4.30 | 3.36 | 3.98 |
Runx2 | 2.60 | 2.44 | 2.95 | 0 |
Samd4 | 4.94 | 1.75 | 5.49 | 0 |
Scaper | 3.69 | 3.49 | 2.68 | 1.86 |
Scube3 | 3.71 | 0.58 | 4.39 | 0 |
Sfrp1 | 3.51 | 1.55 | 5.20 | 0 |
Sgcb | 2.61 | 1.99 | 2.79 | 0 |
Sh3d19 | 2.94 | 2.44 | 5.46 | 0 |
Slc35f1 | 5.18 | 2.06 | 2.61 | 0 |
Slco2a1 | 3.38 | 2.08 | 4.18 | 0 |
Slu7 | 2.80 | 3.56 | 2.54 | 0 |
Stk39 | 3.20 | 3.49 | 4.15 | 0 |
Sync | 2.58 | 2.44 | 3.86 | 0 |
Synpo2 | 3.56 | 1.59 | 4.10 | 0 |
Thsd7a | 3.41 | 3.90 | 2.50 | 0 |
Tm6sf1 | 3.83 | 2.44 | 2.65 | 0 |
Tnc | 21.41 | 0.00 | 2.65 | 0 |
Trak1 | 2.96 | 4.30 | 4.86 | 0 |
Vsnl1 | 5.30 | 0.00 | 5.35 | 0 |
Wipf1 | 2.75 | 0.58 | 3.98 | 0 |
Zfhx3 | 3.32 | 2.06 | 3.82 | 0 |