Table 1 A representative list of target genes for miR-638
Target gene | Representative transcript | Gene name | Conserved sites | Â | Â | Â | Total context + score |
|---|---|---|---|---|---|---|---|
| Â | Â | Â | Total | 8-mer | 7mer-m8 | 7mer-1A | Â |
STARD10 | NM_006645 | StAR-related lipid transfer (START) domain containing 10 | 1 | 1 | 0 | 0 | −0.53 |
NPAS4 | NM_178864 | neuronal PAS domain protein 4 | 1 | 1 | 0 | 0 | −0.44 |
MKLN1 | NM_001145354 | muskelin 1, intracellular mediator containing kelch motifs | 1 | 0 | 0 | 1 | −0.27 |
CCDC92 | NM_025140 | coiled-coil domain containing 92 | 1 | 0 | 0 | 1 | −0.26 |
SHPK | NM_013276 | sedoheptulokinase | 1 | 0 | 0 | 1 | −0.26 |
RIMKLB | NM_020734 | ribosomal modification protein rimK-like family member B | 1 | 0 | 1 | 0 | −0.24 |
PGK1 | NM_000291 | phosphoglycerate kinase 1 | 1 | 0 | 0 | 1 | −0.22 |
HP1BP3 | NM_016287 | heterochromatin protein 1, binding protein 3 | 1 | 0 | 0 | 1 | −0.21 |
LMO4 | NM_006769 | LIM domain only 4 | 1 | 0 | 0 | 1 | −0.21 |
PAK2 | NM_002577 | p21 protein (Cdc42/Rac)-activated kinase 2 | 1 | 0 | 0 | 1 | −0.2 |
MARCKS | NM_002356 | myristoylated alanine-rich protein kinase C substrate | 1 | 0 | 0 | 1 | −0.19 |
FRMPD4 | NM_014728 | FERM and PDZ domain containing 4 | 1 | 0 | 0 | 1 | −0.18 |
EMILIN3 | NM_052846 | elastin microfibril interfacer 3 | 1 | 0 | 0 | 1 | −0.18 |
MYCL1 | NM_001033081 | v-myc myelocytomatosis viral oncogene homolog 1, lung carcinoma derived (avian) | 1 | 0 | 0 | 1 | −s0.18 |
LOC100507050 | NM_001195528 | hypothetical LOC100507050 | 1 | 0 | 0 | 1 | −0.18 |
ISOC2 | NM_001136201 | isochorismatase domain containing 2 | 1 | 0 | 0 | 1 | −0.18 |
EDN3 | NM_207032 | endothelin 3 | 1 | 0 | 0 | 1 | −0.18 |
BRCA1 | NM_007294 | breast cancer 1, early onset | 1 | 0 | 0 | 1 | −0.16 |
TSPAN1 | NM_005727 | tetraspanin 1 | 1 | 0 | 0 | 1 | −0.16 |
BUB3 | NM_004725 | budding uninhibited by benzimidazoles 3 homolog (yeast) | 1 | 0 | 0 | 1 | −0.15 |
SP8 | NM_182700 | Sp8 transcription factor | 1 | 0 | 0 | 1 | −0.15 |
ZNF24 | NM_006965 | zinc finger protein 24 | 1 | 0 | 0 | 1 | −0.14 |
KDSR | NM_002035 | 3-ketodihydrosphingosine reductase | 1 | 0 | 0 | 1 | −0.14 |
KPNA6 | NM_012316 | karyopherin alpha 6 (importin alpha 7) | 1 | 0 | 0 | 1 | −0.13 |
SP7 | NM_001173467 | Sp7 transcription factor | 1 | 0 | 0 | 1 | −0.12 |
NOVA1 | NM_002515 | neuro-oncological ventral antigen 1 | 1 | 0 | 0 | 1 | −0.11 |
SENP1 | NM_014554 | SUMO1/sentrin specific peptidase 1 | 1 | 0 | 0 | 1 | −0.06 |
SRSF1 | NM_001078166 | serine/arginine-rich splicing factor 1 | 1 | 0 | 0 | 1 | −0.05 |
EPHA7 | NM_004440 | EPH receptor A7 | 1 | 0 | 0 | 1 | −0.04 |
TTC28 | NM_001145418 | tetratricopeptide repeat domain 28 | 1 | 0 | 0 | 1 | −0.04 |