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Table 1 A representative list of target genes for miR-638

From: miR-638 mediated regulation of BRCA1affects DNA repair and sensitivity to UV and cisplatin in triple-negative breast cancer

Target gene Representative transcript Gene name Conserved sites     Total context + score
    Total 8-mer 7mer-m8 7mer-1A  
STARD10 NM_006645 StAR-related lipid transfer (START) domain containing 10 1 1 0 0 −0.53
NPAS4 NM_178864 neuronal PAS domain protein 4 1 1 0 0 −0.44
MKLN1 NM_001145354 muskelin 1, intracellular mediator containing kelch motifs 1 0 0 1 −0.27
CCDC92 NM_025140 coiled-coil domain containing 92 1 0 0 1 −0.26
SHPK NM_013276 sedoheptulokinase 1 0 0 1 −0.26
RIMKLB NM_020734 ribosomal modification protein rimK-like family member B 1 0 1 0 −0.24
PGK1 NM_000291 phosphoglycerate kinase 1 1 0 0 1 −0.22
HP1BP3 NM_016287 heterochromatin protein 1, binding protein 3 1 0 0 1 −0.21
LMO4 NM_006769 LIM domain only 4 1 0 0 1 −0.21
PAK2 NM_002577 p21 protein (Cdc42/Rac)-activated kinase 2 1 0 0 1 −0.2
MARCKS NM_002356 myristoylated alanine-rich protein kinase C substrate 1 0 0 1 −0.19
FRMPD4 NM_014728 FERM and PDZ domain containing 4 1 0 0 1 −0.18
EMILIN3 NM_052846 elastin microfibril interfacer 3 1 0 0 1 −0.18
MYCL1 NM_001033081 v-myc myelocytomatosis viral oncogene homolog 1, lung carcinoma derived (avian) 1 0 0 1 −s0.18
LOC100507050 NM_001195528 hypothetical LOC100507050 1 0 0 1 −0.18
ISOC2 NM_001136201 isochorismatase domain containing 2 1 0 0 1 −0.18
EDN3 NM_207032 endothelin 3 1 0 0 1 −0.18
BRCA1 NM_007294 breast cancer 1, early onset 1 0 0 1 −0.16
TSPAN1 NM_005727 tetraspanin 1 1 0 0 1 −0.16
BUB3 NM_004725 budding uninhibited by benzimidazoles 3 homolog (yeast) 1 0 0 1 −0.15
SP8 NM_182700 Sp8 transcription factor 1 0 0 1 −0.15
ZNF24 NM_006965 zinc finger protein 24 1 0 0 1 −0.14
KDSR NM_002035 3-ketodihydrosphingosine reductase 1 0 0 1 −0.14
KPNA6 NM_012316 karyopherin alpha 6 (importin alpha 7) 1 0 0 1 −0.13
SP7 NM_001173467 Sp7 transcription factor 1 0 0 1 −0.12
NOVA1 NM_002515 neuro-oncological ventral antigen 1 1 0 0 1 −0.11
SENP1 NM_014554 SUMO1/sentrin specific peptidase 1 1 0 0 1 −0.06
SRSF1 NM_001078166 serine/arginine-rich splicing factor 1 1 0 0 1 −0.05
EPHA7 NM_004440 EPH receptor A7 1 0 0 1 −0.04
TTC28 NM_001145418 tetratricopeptide repeat domain 28 1 0 0 1 −0.04