Table 1 Frequencies of DNA methylation in the cancer tissue samples
Loci ID | Samples availablea | Methylation-negative, n(%) | Low methylation, n(%)b | Heterogeneous methylation, n(%) | Full methylation, n(%) | Both alleles present, n(%) |
|---|---|---|---|---|---|---|
TITF1 | 220 | 0 (0.0) | 38 (17.3) | 0 | 145 (65.9) | 37 (16.8) |
HOXB13 | 239 | 18 (7.5) | 20 (8.4) | 0 | 23 (9.6) | 178 (74.5) |
NR2E1 | 164 | 15 (9.1) | 14 (8.5) | 18 (11.0) | 89 (54.3) | 28 (17.1) |
HTR1B | 162 | 28 (17.3) | 68 (42.0) | 20 (12.3) | 4 (2.5) | 42 (25.9) |
HMX2 | 187 | 9 (4.8) | 1 (0.5) | 13 (7.0) | 164 (87.7) | 0 |
BC008699 | 261 | 4 (1.5) | 4 (1.5) | 26 (10.0) | 206 (78.9) | 21 (8.0) |
SLC38A4 | 234 | 0 | 16 (6.8) | 93 (39.7) | 80 (34.2) | 45 (19.2) |
FLJ32447 | 264 | 0 | 28 (10.6) | 191 (72.3) | 48 (18.2) | 0 |
WT1 | 218 | 44 (20.2) | 0 | 178 (81.7) | 21 (9.6) | 0 |
TMEM132D | 218 | 6 (2.8) | 21 (9.6) | 154 (70.6) | 16 (7.3) | 21 (9.6) |
NKX2-3 | 169 | 0 | 16 (9.5) | 108 (63.9) | 38 (22.5) | 7 (4.1) |
GHSR | 260 | 56 (21.5) | 24 (9.2) | 180 (69.2) | 0 | 0 |
ONECUT | 243 | 0 | 16 (9.5) | 134 (55.1) | 63 (25.9) | 30 (12.3) |
LHX1 | 243 | 0 | 28 (11.5) | 145 (59.7) | 41 (16.9) | 29 (11.9) |
SIX6 | 246 | 5 (2.0) | 11 (4.5) | 173 (70.3) | 55 (22.4) | 2 (0.8) |
CA10 | 230 | 21 (9.1) | 48 (20.9) | 137 (59.6) | 24 (10.4) | 0 |
CHR | 252 | 0 | 44 (17.5) | 192 (76.2) | 16 (6.3) | 0 |
POU4F | 255 | 10 (3.9) | 6 (2.4) | 195 (76.5) | 44 (17.3) | 0 |
PHOX2B | 256 | 0 | 3 (1.2) | 199 (77.7) | 53 (20.7) | 1 (0.4) |