Significant overlap between human genome-wide association-study nominated breast cancer risk alleles and rat mammary cancer susceptibility loci

Sanders, Jennifer; Samuelson, David J

doi:10.1186/bcr3607

Table 2 Random rat genomic segments and human orthologous regions used in this study

From: Significant overlap between human genome-wide association-study nominated breast cancer risk alleles and rat mammary cancer susceptibility loci

Rat Mcslocus	Rat chr	Region (UCSC rat assembly 2004)	Human orthologous region (UCSC human assembly 2009)
Random rat region 1	RNO9	20,000,000-44,322,711	Chr2: 97,158,323-106,711,249
			Chr6: 56,223,874-73,919,999
			Chr2: 189,182,486-189,878,065
			Chr13: 103,235,577-103,556,495
			Chr2: 128,848,569-129,254,860
Random rat region 2	RNO15	60,000,001-84322711	Chr13: 53,226,266-74,878,291
Random rat region 2	RNO15	60,000,001-84322711	Chr13: 42,064,282-42,529,444
Random rat region 3	RNO16	68,621,246-92,943,956	Chr13: 103,539,456-115,092,822
			Chr8: 36,627,241-42,308,840
			Chr8: 638,582-6,693,649
			Chr8: 42,690,588-43,056,179
			Chr13: 52,753,969-53,050,606
Random rat region 4	RNO9	91,398,460-115,721,170	Chr5: 98,385,946-110,062,886
			Chr18: 612,848-9,957,727
			Chr2: 240,340,012-242,806,427
Random rat region 5	RNO13	55,373,307-79,696,017	Chr1: 169,844,936-194,938,667
Random rat region 6	RNO11	39,408,000-63,730,710	Chr3: 95,108,010-118,895,417
Random rat region 7	RNO17	68,384,015-92,706,72	Chr10: 138,740-22,530,353
Random rat region 7	RNO17	68,384,015-92,706,72	Chr1: 236,673,870-240,084,642
Random rat region 8	RNO3	12,585,543-36,908,253	Chr2: 140,246,548-155,465,845
Random rat region 8	RNO3	12,585,543-36,908,253	Chr9: 123,526,091-129,443,210
Random rat region 9	RNO19	34,130,390-58,453,100	Chr16: 66,968,878-90,107,058
			Chr10: 33,502,588-35,153,585
			Chr1: 229,402,942-235,324,796
			Chr4: 150,548,912-150,855,848
Random rat region 10	RNO12	18,203,110-42,525,820	Chr12: 110,503,298-120,870,994
			Chr12: 121,578,435-132,335,900
			Chr7: 66,878,689-71,941,664
			Chr7: 101,137,811-102,184,451
			Chr7: 99,995,220-100,350,712
			Chr7: 72,707,443-74,223,683
			Chr7: 75,027,443-76,145,496
Random rat region 11	RNO20	30,416,373-54,739,083	Chr6: 101,086,446- 116,620,662
			Chr6: 117,266,139-123,147,126
			Chr2: 109,065,537-109,613,060
			Chr6: 116,688,407-116,905,609
Random rat region 12	RNO13	955,085-25,277,795	Chr18: 58,351,906-63,553,937
Random rat region 12	RNO13	955,085-25,277,795	Chr2: 124,758,685-125,682,595
Random rat region 13	RNO1	1,136,860- 25,459,569	Chr6: 128,011,342-150,185,813
Random rat region 13	RNO1	1,136,860- 25,459,569	Chr6: 123,315,387-124,317,854
Random rat region 14	RNO2	182,078,762-206,401,472	Chr1: 107,259,608-154,441,176

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ISSN: 1465-542X

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