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Table 2 Over-represented functional categories within genes up- and/or down-regulated after celecoxib treatment using DAVID.

From: A randomised controlled phase II trial of pre-operative celecoxib treatment reveals anti-tumour transcriptional response in primary breast cancer

GO-ID

Term

Count

Fold enrichment

P-valuea

Up-regulated

0030198

Extracellular matrix organisation

28

4.657

6.35E-08

0009611

Response to wounding

70

2.337

1.32E-07

0007155

Cell adhesion

83

2.108

3.24E-07

0022610

Biological adhesion

83

2.105

3.46E-07

0001944

Vasculature development

43

2.951

1.20E-06

0001568

Blood vessel development

42

2.953

1.96E-06

0043062

Extracellular structure organisation

33

3.502

2.35E-06

0051270

Regulation of cell motion

34

3.047

4.89E-05

0001501

Skeletal system development

46

2.510

5.23E-05

0030334

Regulation of cell migration

31

3.173

9.15E-05

0040012

Regulation of locomotion

33

2.973

1.51E-04

0042127

Regulation of cell proliferation

83

1.834

2.27E-04

0042060

Wound healing

32

2.944

3.14E-04

0007160

Cell-matrix adhesion

20

3.931

1.42E-03

0048514

Blood vessel morphogenesis

33

2.692

1.56E-03

0031589

Cell-substrate adhesion

21

3.745

1.57E-03

0006928

Cell motion

53

1.984

7.97E-03

0001525

Angiogenesis

25

2.922

1.15E-02

0009612

Response to mechanical stimulus

14

4.324

3.91E-02

Down-regulated

0006259

DNA metabolic process

52

3.018

5.10E-09

0007049

Cell cycle

64

2.411

1.85E-07

0006260

DNA replication

28

4.387

3.98E-07

0022402

Cell cycle process

50

2.569

4.12E-06

0000278

Mitotic cell cycle

37

2.898

3.70E-05

0000279

M phase

32

2.832

6.92E-04

0051276

Chromosome organisation

40

2.461

7.18E-04

0006974

Response to DNA damage stimulus

34

2.656

1.20E-03

0000087

M phase of mitotic cell cycle

25

3.229

1.76E-03

0022613

Ribonucleoprotein complex biogenesis

22

3.544

2.07E-03

0000280

Nuclear division

24

3.156

4.53E-03

0007067

Mitosis

24

3.156

4.53E-03

0022403

Cell cycle phase

35

2.454

4.81E-03

0042254

Ribosome biogenesis

17

4.062

8.27E-03

0048285

Organelle fission

24

3.031

9.01E-03

0006281

DNA repair

27

2.785

9.53E-03

0006396

RNA processing

41

2.185

1.01E-02

0031396

Regulation of protein ubiquitination

15

4.434

1.30E-02

0031397

Negative regulation of protein ubiquitination

13

5.177

1.31E-02

0031145

Anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process

12

5.461

2.01E-02

0016071

mRNA metabolic process

31

2.428

2.52E-02

0034470

ncRNA processing

20

3.133

4.28E-02

0051439

Regulation of ubiquitin-protein ligase activity during mitotic cell cycle

12

4.986

4.85E-02

  1. aP-values shown were corrected for multiple testing using the Bonferroni method; categories ranked by P-value; functional categories with P-values < 0.05 and at least five, but less than 150 genes meeting the criterion are shown.