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Table 2 All probes of the BRCA1-like MLPA kit

From: Quantitative copy number analysis by Multiplex Ligation-dependent Probe Amplification (MLPA) of BRCA1-associated breast cancer regions identifies BRCAness

Probe name

Genomic location

Stuffer length

Probe type

SEMA3B - 3

03-050282676

140

Test_loss

RASSF1 - 1

03-050353347

328

Test_loss

DEPDC1B - 2

05-060018734

241

Test_loss

MCCC2 - 16

05-070984253

409

Test_loss

GPR98 - 90

05-090495354

184

Test_loss

APC - 1

05-112071337

226

Test_loss

LMNB1 - 7

05-126184598

214

Test_loss

PTEN - 1

10-089614110

233

Test_loss

PTEN - 9

10-089714978

463

Test_loss

CEP290 - 26

12-087019051

400

Test_loss

BTG1 AREA - 29

12-090905485

155

Test_loss

PAH - 3

12-101812669

202

Test_loss

BMP4 - 4

14-053488631

454

Test_loss

GCH1 - 6b

14-054380537

283

Test_loss

RDH12 - 7

14-067263397

319

Test_loss

THBS1 - 1

15-037660496

346

Test_loss

CAPN3 - 16

15-040479002

148

Test_loss

FBN1 - 4

15-046679657

172

Test_loss

CASR - 7

03-123485226

483

Test_gain

ATR - 47

03-143651063

373

Test_gain

HLTF - 1

03-150286916

193

Test_gain

PDCD10 - 5

03-168905298

382

Test_gain

PIK3CA - 2

03-180399607

427

Test_gain

TPMT - 5

06-018247829

265

Test_gain

HFE - 2

06-026198995

301

Test_gain

FANCE - 7

06-035535433

274

Test_gain

GATA3 - 1

10-008136773

136

Test_gain

CUGBP2 - 6

10-011017023

364

Test_gain

FGF23 - 1

12-004358933

436

Test_gain

ETV6 - 5

12-011913651

474

Test_gain

ABCC4 - 23

13-094525703

247

Test_gain

PCCA - 6

13-099607548

418

Test_gain

PCCA - 11

13-099718959

291

Test_gain

FGF14 - 2

13-101366785

492

Test_gain

BRCA1 - 20

17-038462662

390

BRCA probe

BRCA1 - 2

17-038529544

167

BRCA probe

BRCA2 - 5

13-031798006

337

BRCA probe

BRCA2 - 11

13-031812003

130

BRCA probe

REFERENCE

02-071430713

355

Reference

REFERENCE

02-267097

310

Reference

REFERENCE

07-075448405

124

Reference

REFERENCE

07-116126400

160

Reference

REFERENCE

10-042932039

178

Reference

REFERENCE

10-075547782

220

Reference

REFERENCE

14-019994693

208

Reference

  1. MLPA, Multiplex Ligation-dependent Probe Amplification