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Table 1 Chromosomal regions with differing copy number between CHEK2 1100delC-mutation carriers and others

From: Breast tumors from CHEK2 1100delC- mutation carriers: genomic landscape and clinical implications

Chromosome Start End Clones Sum of clones Length Cytoband P value
1 63762320 75867880 109 410 46865220 1p13.3-31.3 0.0031
1 76025260 87854764 110     0.0004
1 87964559 98030482 81     0.0001
1 98201778 110627540 110     0.0004
8 3329536 5083904 26 46 4279506 8p21.1-2 0.0062
8 5292190 6859255 15     0.0027
8 7041464 7609042 5     0.0066
8 24208215 29092984 35 41 5366218 8p23.1-2 0.0035
8 29293167 29574433 6     0.0064
12 46370995 47105108 10 103 9563151 12q13.11-3 0.0018
12 47191262 49654440 21     0.0022
12 49858115 51459707 21     0.0065
12 51492453 52261807 9     0.0025
12 52382320 54215964 23     0.0009
12 54367089 55934146 19     0.0044
16 11139 3142783 23 23 3131644 16p13.3 0.0091
17 9578676 15297799 54 54 5719123 17p12-13.1 0.0025
19 2122188 4798764 17 17 2676576 19p13.3 0.0045
  1. Areas on chromosomes 1, 8, and 12 consist of multiple non-overlapping regions with differing copy numbers, whereas areas on chromosomes 16, 17, and 19 consist of single regions. Each row represents one region with constant calls across all samples. Sum of clones and length columns give the number of clones on all regions of each area and the total length of the area, respectively.