Table 2 Regions amplified with a frequency of >1% in the 359 tumors
Amplified region | Percentage of amplified samples | Significantly correlated genes |
|---|---|---|
1q21.1 | 1.1 | BCL9, ACP6 |
1q32.1-q32.2 | 1.9 | BTG2, ATP2B4, SOX13, GOLT1A, PLEKHA6, PPP1R15B, MDM4, RBBP5, RIPK5, ELK4, RAB7L1, SRGAP2, IKBKE, LGTN, DYRK3, MAPKAPK2, |
6q21 | 1.4 | BVES, AIM1 |
6q22.33-q23.1 | 1.1 | PTPRK, L3MBTL3 |
8p12-p11.23 | 5.8 | ZNF703, SPFH2, PROSC, RAB11FIP1, ADRB3, BAG4, PPAPDC1B, WHSC1L1, FGFR1 |
8q22.2-q22.3 | 3.1 | VPS13B, RNF19, ANKRD6, GRHL2, EDD1, AZIN1, ATP6V1C1, FZD6, SLC25A32 |
8q23.3-q24.11 | 6.1 | TRPS1, THRAP6, EXT1 |
8q24.13-q24.22 | 6.7 | ZHX1, ATAD2, C8orf32, FBXO32, TMEM65, TRMT12, RNF139, TATDN1, KIAA0196, C8orf36, TRIB1, FAM84B, MYC, DDEF1 |
10p15.3 | 1.1 | PFKP, PITRM1 |
10p14 | 1.4 | |
10q22.3 | 1.4 | POLR3A, RAI17, PPIF |
11q13.3-q13.4 | 6.4 | CCND1, FADD, PPFI1A, CTTN |
11q13.5-q14.1 | 3.6 | PHCA, CAPN5, MYO7A, PAK1, HBXAP, ALG8, LOC283219, GAB2 |
12p13.33 | 1.7 | JARID1A, WNK1, RAB6IP2, FBXL14, WNT5B, ADIPOR2, DCP1B |
12p13.31 | 1.4 | CD9, TNFRSF1A, LTBR, TAPBPL, MRPL51, NOL1, CHD4, ING4, ZNF384, COPS7A, MLF2, PTMS, USP5, SPSB2, ENO2, ATN1, PTPN6, PHB2, C1 S, C1RL, CLSTN3, PEX5 |
12q15 | 1.9 | MDM1, NUP107, SLC35E3, MDM2, CPSF6, YEATS4, FRS2, CCT2, CNOT2 |
17q11.2 | 3.6 | UNC119, PIGS, ALDOC, SPAG5, KIAA0100, SDF2, SUPT6 H, RAB34, NEK8, ERAL1, FLOT2, PHF12, LOC116236, GIT1, ANKRD13B, CORO6, SSH2 |
17q12.1-q21.1 | 13.6 | FBXL20, PPARBP, STARD3, PERLD1, HER2, C17orf37, GRB7, GSDML, ORMDL3, PSMD3, THRAP4 |
17q21.33 | 4.2 | LOC81558, ITGA3, PDK2, PPP1R9B, XYLT2, MRPL27, FLJ20920, RSAD1, EPN3, ABCC3, ANKRD40, TOB1 |
17q23.2 | 3.1 | TRIM25, AKAP1, MSI2 |
17q23.2 | 3.1 | TMEM49, TUBD1, ABC1, USP32, APPBP2, BCAS3 |
17q23.3-q24.1 | 2.5 | CYB561, WDR68, MAP3K3, LYK5, DDX42, FTSJ3, PSMC5, SMARCD2, ERN1, POLG2, DDX5, SMURF2 |
19p13.13-p13.2 | 1.1 | SIPA1L3, PPP1R14A, SPINT2, YIF1B, EIF3S12 |
19p13.2 | 1.1 | FBL, PSMC4, FLJ36888, PLD3 |
19q13.42 | 1.4 | SUV42OH2, KLP1, ZNF579, FLJ14768, ZNF524, LOC147808, ZNF580, ZNF581 |
20q13.31-q13.32 | 1.1 | RAE1, RNPC1, RAB22A, VAPB, STX16, GNAS, TH1L, CTSZ |