Table 2 Methylated CpG islands not associated with known genes
From: Methylation of homeobox genes is a frequent and early epigenetic event in breast cancer
Target number | Symbol | CpG island locationa | Average ratiob | Count |
|---|---|---|---|---|
1 | CGI 1:42 | Chr1: 38714506 to 38714991 | 6.27 | 4 |
2 | CGI 6:60 | Chr6: 106535804 to 106536465 | 4.69 | 4 |
3 | CGI 2:112 | Chr2: 239419845 to 239420943 | 4.22 | 4 |
4 | CGI 4:34 | Chr4: 174658599 to 174659018 | 2.94 | 4 |
5* | CGI 7:48 | Chr7: 35460738 to 35461227 | 17.26 | 3 |
6 | CGI 8:121 | Chr8: 100054909 to 100056159 | 16.81 | 3 |
7 | CGI 10:46b | Chr10: 119484483 to 119484981 | 15.44 | 3 |
8 | CGI 17:16 | Chr17: 44182434 to 44182640 | 13.96 | 3 |
9 | CGI 7:351 | Chr7: 129205522 to 129209745 | 11.56 | 3 |
10 | CGI 6:19 | Chr6: 27755772 to 27755984 | 10.16 | 3 |
11 | CGI 8:31 | Chr8: 81968510 to 81968882 | 8.45 | 3 |
12 | CGI 22:48 | Chr22: 44655029 to 44655728 | 7.98 | 3 |
13 | CGI 2:77 | Chr2: 176639821 to 176640909 | 7.91 | 3 |
14 | CGI 5:47 | Chr5: 176039674 to 176040127 | 7.78 | 3 |
15 | CGI 7:29 | Chr7: 129210233 to 129210591 | 7.60 | 3 |
16 | CGI 3:47 | Chr3: 134875805 to 134876344 | 6.58 | 3 |
17* | CGI 4:35 | Chr4: 24699204 to 24699608 | 6.22 | 3 |
18 | CGI 6:18 | Chr6: 27571155 to 27571358 | 6.18 | 3 |
19 | CGI 7:277 | Chr7: 154857318 to 154860615 | 5.91 | 3 |
20 | CGI 10:46 | Chr10: 102409137 to 102409658 | 5.84 | 3 |
21 | CGI 4:21 | Chr4: 174657922 to 174658134 | 5.53 | 3 |
22 | CGI X:92 | Chrx: 136459742 to 136460985 | 4.81 | 3 |
23 | CGI 22:18 | Chr22: 47762399 to 47762664 | 4.15 | 3 |
24 | CGI 1:130 | Chr1: 199774402 to 199775940 | 3.77 | 3 |
25 | CGI 5:26 | Chr5: 3379328 to 3379645 | 3.42 | 3 |
26 | CGI 5:87 | Chr5: 134853297 to 134854395 | 3.16 | 3 |
27 | CGI 8:72 | Chr8: 1100465 to 1101480 | 2.35 | 3 |