Table 5 Top 50 genes differentially expressed in tumor-associated stroma

Hs.179729.0.S1_3p_a_at

6.5

7.0

COL10A1 – collagen, type X, alpha 1(Schmid metaphyseal chondrodysplasia)

Hs.28792.0.S1_3p_at

5.9

6.0

NA

4876385_3p_at

4.9

6.3

COL11A1 – collagen, type XI, alpha 1

g7019348_3p_at

4.9

5.7

GREM1 – gremlin 1, cysteine knot superfamily, homolog (Xenopus laevis)

Hs.179729.1.S1_3p_a_at

4.8

5.5

COL10A1 – collagen, type X, alpha 1(Schmid metaphyseal chondrodysplasia)

Hs.297939.3.S1_3p_at

4.6

5.1

FNDC1 – fibronectin type III domain containing 1

37892_3p_at

4.1

5.6

COL11A1 – collagen, type XI, alpha 1

Hs.41271.0.S1_3p_at

4.7

4.9

COL8A1 – collagen, type VIII, alpha 1

g4502938_3p_s_at

3.8

5.4

COL11A1 – collagen, type XI, alpha 1

g186414_3p_a_at

4.5

4.4

INHBA – inhibin, beta A

g8393842_3p_at

4.4

4.4

NOX4 – NADPH oxidase 4

Hs.288467.0.S1_3p_at

3.8

4.8

LRRC15 – leucine rich repeat containing 15

Hs.105700.0.S1_3p_a_at

4.1

4.2

SFRP4 – secreted frizzled-related protein 4

g4481752_3p_at

3.6

4.4

GJB2 – gap junction protein, beta 2, 26 kDa

g8923132_3p_at

3.6

4.3

ASPN – asporin

Hs.287820.2.A1_3p_s_at

3.8

4.1

FN1 – fibronectin 1

g8400733_3p_a_at

3.5

3.9

SFRP4 – secreted frizzled-related protein 4

g10863087_3p_a_at

3.4

3.9

GREM1 – gremlin 1, cysteine knot superfamily, homolog (Xenopus laevis)

g5174662_3p_at

3.4

3.4

S100P – S100 calcium binding protein P

Hs.283713.0.A1_3p_at

3.2

3.5

CTHRC1 – collagen triple helix repeat containing 1

g4502844_3p_at

3.1

3.5

CILP – cartilage intermediate layer protein, nucleotide pyrophosphohydrolase

Hs.76722.2.S1_3p_at

2.8

3.7

-

Hs.70823.0.S3_3p_at

3.3

3.2

SULF1 – sulfatase 1

g4505186_3p_at

3.3

3.0

CXCL9 – chemokine (C-X-C motif) ligand 9

Hs.101302.0.S2_3p_s_at

2.2

3.9

COL12A1 – collagen, type XII, alpha 1

g11415037_3p_at

-3.2

-3.0

SLC22A3 – solute carrier family 22 (extraneuronal monoamine transporter), member 3

Hs.325823.0.A1_3p_at

-2.7

-3.5

CD36 – CD36 molecule (thrombospondin receptor)

g4557418_3p_at

-2.7

-3.6

CD36 – CD36 molecule (thrombospondin receptor)

g4557544_3p_a_at

-2.9

-3.5

EDN3 – endothelin 3

Hs2.147313.1.S1_3p_s_at

-2.9

-3.5

CD300LG – CD300 molecule-like family member g

Hs.106283.4.S1_3p_at

-3.0

-3.4

KLHL13 – kelch-like 13 (Drosophila)

g8400731_3p_a_at

-2.6

-4.0

SFRP1 – secreted frizzled-related protein 1

Hs.250692.0.S4_3p_at

-3.0

-3.7

HLF – hepatic leukemia factor

g4826977_3p_at

-3.3

-3.5

RELN – reelin

Hs.76325.1.A1_3p_x_at

-3.0

-3.9

IGJ – immunoglobulin J polypeptide, linker protein for immunoglobulin alpha and mu polypeptides

Hs.76325.1.A1_3p_at

-3.1

-4.0

IGJ – immunoglobulin J polypeptide, linker protein for immunoglobulin alpha and mu polypeptides

g10835124_3p_a_at

-4.0

-3.1

DCX – doublecortex; lissencephaly, X-linked (doublecortin)

g7657105_3p_at

-3.2

-4.0

GABRP – gamma-aminobutyric acid A receptor, pi

g4506328_3p_at

-3.4

-3.9

PTPRZ1 – protein tyrosine phosphatase, receptor-type, Z polypeptide 1

g4758377_3p_at

-3.9

-3.4

FIGF – c-fos induced growth factor (vascular endothelial growth factor D)

g12707575_3p_at

-3.3

-4.1

OXTR – oxytocin receptor

g13518036_3p_a_at

-2.5

-4.9

MATN2 – matrilin 2

g4559274_3p_a_at

-3.9

-3.6

ELF5 – E74-like factor 5 (ets domain transcription factor)

Hs.10587.0.S1_3p_at

-2.5

-5.1

DMN – desmuslin

Hs.49696.0.A1_3p_at

-3.7

-4.0

SCARA5 – scavenger receptor class A, member 5 (putative)

g4557578_3p_at

-3.4

-4.4

FABP4 – fatty acid binding protein 4, adipocyte

g13186315_3p_a_at

-3.5

-4.3

CAPN6 – calpain 6

g11991655_3p_at

-3.2

-5.3

C2orf40 – chromosome 2 open reading frame 40

g562105_3p_a_at

-4.9

-4.5

DLK1 – delta-like 1 homolog (Drosophila)

g6005949_3p_at

-5.0

-4.8

WIF1 – WNT inhibitory factor 1