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Table 1 Antibodies and probes used

From: Surface-enhanced laser desorption/ionization time-of-flight proteomic profiling of breast carcinomas identifies clinicopathologically relevant groups of patients similar to previously defined clusters from cDNA expression

Immunohistochemistry

Manufacturer, clone

Antigen retrieval

Dilution

Evaluation

Estrogen receptor alpha

Lab Vision, SP1

0.01 M citrate NaOH, pH 6.0

1:4,000

Threshold at 5% positive nuclei

Estrogen receptor beta

Novocastra, EMR02

0.001 M EDTA-NaOH, pH 8.0

1:100

Threshold at 5% positive nuclei

Progesterone receptor

Lab Vision, SP2

0.01 M citrate NaOH, pH 6.0

1:2,000

Threshold at 5% positive nuclei

HER2/neu immunohistochemistry

Dako, polyclonal

0.01 M citrate NaOH, pH 6.0

1:200

0 - 1 + -2 + 3 + according to DAKO manual

Cytokeratin 5/6

Dako, D5/6 B4

0.001 M EDTA-NaOH, pH 8.0

1:200

Threshold at 1% positive tumor cells

Cytokeratin 14

Novocastra, LL002

0.01 M citrate NaOH, pH 6.0

1:200

Threshold at 1% positive tumor cells

Cyclin D1 immunohistochemistry

Lab Vision, SP4

0.001 M EDTA-NaOH, pH 8.0

1:800

Threshold at 5% positive nuclei

Mucin 1

Novocastra, MA695

0.001 M EDTA-NaOH, pH 8.0

1:800

0 negative; 1, 1% to 50%; 2, >50% tumor cells positive

Gross cystic fluid protein

Novocastra, 23A3

0.001 M EDTA-NaOH, pH 8.0

1:800

Threshold at 1% positive tumor cells

In situ hybridization

Probe

Protocol

Evaluation

 

HER2/neu amplification

Abbott PathVysion HER2 DNA Probe Kit

Manufacturer's instructions

Locus-specific signal to centromere signal ratio >2.0 considered amplified

 

Cyclin D1 amplification

Abbott Vysis LSI Cyclin D1/CEP11

Manufacturer's instructions

Locus-specific signal to centromere signal ratio >2.0 considered amplified

 
  1. EDTA, ethylenediamine tetraacetic acid. Lab Vision (Thermo Fisher Scientific, Fremont CA, USA); Novocastra (Leica Microsystems, Wetzlar, Germany); Dako (Glostrup, Denmark); Abbott (Abbott Park, IL, USA).