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Table 2 Gene sets used in this analysis

From: Evaluation of biological pathways involved in chemotherapy response in breast cancer

Functional Pathway Number of probe sets (corresponding # of known genes) Reference
Cytogenetic sets (n = 319 sets) 15-500 (variable) Subramanian et al. [5]
Functional sets (n = 522 sets) 15-500 (variable) Subramanian et al. [5]
Oncogenic Pathways (5 sets)   Bild et al. [10]
Myc 164 (139)  
Ras 228 (176)  
E2F3 173 (147)  
β-catenin 54 (42)  
Src 46 (44)  
Genomic Grade Index (1 set) 242 (183) Sotiriou et al. [13]
76-gene prognostic signature (1 set) 76 (76) Wang et al. [14]
Proliferation signature (1 set) 74 (44) Whitfield et al. [15]
ABC transporter gene set (1 set) 61 (47) Szakacs et al. [16]
Mutant-p53 signature (1 set) 25 (21) Miller et al. [11]
ER-associated gene set (1 set) 200 (187) Symmans et al. [12]