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Table 2 Minor allele frequencies, P values and per-allele odds ratios of the seven SNPs in the Breast Cancer Association Consortium (BCAC) study and in the Dutch hospital-based ORIGO cohort of breast cancer patients

From: Clinical correlates of low-risk variants in FGFR2, TNRC9, MAP3K1, LSP1 and 8q24 in a Dutch cohort of incident breast cancer cases

SNP

Minor allele frequency

P trend

Per-allele odds ratio

 

BCAC study

ORIGO cohort

BCAC study

ORIGO cohort

BCAC study

ORIGO cohort

rs2981582

0.38

0.38

2.10-76

0.007

1.26

1.30

rs3803662

0.25

0.26

1.10-36

0.131

1.20

1.13

rs889312

0.28

0.31

7.10-20

0.727

1.13

1.03

rs12443621a

0.46

0.43

2.10-19

0.805

1.11

1.05

rs8051542a

0.44

0.48

1.10-12

0.494

1.09

0.96

rs13281615

0.40

0.39

5.10-12

0.277

1.08

1.10

rs3817198

0.30

0.30

3.10-9

0.529

1.07

1.06

  1. aSNPs rs12443621 and rs8051542 were in linkage disequilibrium with SNP rs3803662.