Gene | SNP source | Total SNPs with MAF > 0.05 | Total SNPs after exclusion of African subjects | No. of Tag SNPs selected for r2 > 0.8 | Usable SNPs | No. of SNPs tagged with rp2 > 0.8 (percent) | No. of SNPs tagged with rp 2 > 0.5 (percent) | No. of SNPs tagged with r2S > 0.8 (percent) |
---|---|---|---|---|---|---|---|---|
ATM | EGP | 75 | 69 | 9 | 9 | 64 (92) | 69 (100) | 65 (94) |
BRCA1 | EGP | 123 | 113 | 8 | 5 | 67 (59) | 109 (96) | 77 (68) |
BRCA2 | EGP | 113 | 91 | 22 | 16 | 53 (58) | 86 (95) | 61 (67) |
CHEK2 | HAPMAP | 30 | N/A | 10 | 10 | 16 (53) | 20 (67) | 22 (73) |
TP53 | EGP | 46 | 39 | 6 | 5 | 24 (61) | 35 (90) | 31 (79) |