Table 2 List of 35 genes able to discriminate between all DCIS and all invasive samples
From: Classification of ductal carcinoma in situ by gene expression profiling
Rank | NKI ID | Symbol | Annotation | Accession no. |
|---|---|---|---|---|
1 | 116810 | ADM | Adrenomedullin | AA446120 |
2 | 123346 | Â | EST | H17315 |
3 | 117289 | MMP11 | Matrix metalloproteinase 11 (stromelysin 3) | AA045500 |
4 | 121066 | DAPK3 | Death-associated protein kinase 3 | AA973730 |
5 | 123776 | PIAS4 | Protein inhibitor of activated STAT protein | H30547 |
6 | 101837 | DHX34 | KIAA0134 gene product | AA477623 |
7 | 102847 | YIF1 | Putative transmembrane protein; homolog of yeast Golgi membrane protein Yif1p (Yip1p-interacting factor) | H79351 |
8 | 117345 | ACTN1 | Actinin, alpha 1 | AA669042 |
9 | 127755 | TGFB2 | Transforming growth factor, beta 2 | W47556 |
10 | 108960 | GABRD | Gamma-aminobutyric acid (GABA) A receptor, delta | H41122 |
11 | 108348 | MFAP2 | Microfibrillar-associated protein 2 | N67487 |
12 | 129658 | MGC13045 | DnaJ (Hsp40) homolog, subfamily C, member 4 | AA996059 |
13 | 105479 | BAT3 | HLA-B-associated transcript-3 | AA434416 |
14 | 120649 | KCTD5 | Hypothetical protein | AA521027 |
15 | 110728 | FBXL15 | F-box and leucine-rich repeat protein 15 | T61547 |
16 | 120934 | EIF4G1 | Eukaryotic translation initiation factor 4 gamma, 1 | R37276 |
17 | 118584 | C9orf115 | ESTs, weakly similar to B36298 proline-rich protein PRB3S [Homo sapiens] | AA479713 |
18 | 105533 | ARF1 | ADP-ribosylation factor 1 | W45572 |
19 | 131909 | TUBB2 | Tubulin, beta polypeptide | AI672565 |
20 | 131540 | PRPF31 | DKFZP566J153 protein | AI253017 |
21 | 110281 | HSPA1L | Heat shock 70-kD protein-like 1 | H17513 |
22 | 107215 | KCTD5 | Hypothetical protein | AA429470 |
23 | 121937 | FLJ10374 | Hypothetical protein FLJ10374 | AA676962 |
24 | 100368 | GNB2 | Guanine nucleotide binding protein (G protein), beta polypeptide 2 | N68166 |
25 | 105453 | PSAP | Prosaposin (variant Gaucher disease and variant metachromatic leukodystrophy) | N72215 |
26 | 115391 | LMCD1 | LIM and cysteine-rich domains 1 | AA452125 |
27 | 128198 | MMP11 | Matrix metalloproteinase 11 (stromelysin 3) | AA954935 |
28 | 123688 | COL1A1 | Collagen, type I, alpha 1 | R48844 |
29 | 127890 | PTMS | Parathymosin | AA458981 |
30 | 102044 | DRAP1 | DR1-associated protein 1 (negative cofactor 2 alpha) | AA406285 |
31 | 101067 | MAP7 | Microtubule-associated protein 7 | R77252 | R77251 |
32 | 129438 | IQGAP1 | IQ motif containing GTPase activating protein 1 | AA478633 |
33 | 125700 | APC2 | Adenomatous polyposis coli like | AA976241 |
34 | 127881 | NFIC | Nuclear factor I/C (CCAAT-binding transcription factor) | T59427 |
35 | 109065 | SYT5 | Synaptotagmin V | H39018 |