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Table 4 'Enhanced LAD model' consisting of 20 positive and 20 negative patterns on support set of 17 genes

From: Breast cancer prognosis by combinatorial analysis of gene expression data

Patterns

Definition of Patterns

Patterns' coverages (prevalences) on training set

 

AB033007

NM_001661

NM_001756

AF148505

Contig42421_RC

NM_003748

NM_020974

AL080059

AL110129

Contig15031_RC

Contig65439

Contig37063_RC

Contig41383_RC

AL049689

Contig63102_RC

Contig55574_RC

Contig38451_RC

  
 

Attr. 1

Attr. 2

Attr. 3

Attr. 4

Attr. 5

Attr. 6

Attr. 7

Attr. 8

Attr. 9

Attr. 10

Attr. 11

Attr. 12

Attr. 13

Attr. 14

Attr. 15

Attr. 16

Attr. 17

Pos Prev

Neg Prev

P1

  

>-0.42

      

≤0.09

≤0.06

      

19 (55.9%)

0

P2

     

≤0.07

    

≤-0.01

 

≤0.07

    

18 (52.9%)

0

P3

  

>-0.42

     

≤0.06

 

≤0.06

      

18 (52.9%)

0

P4

          

≤-0.01

≤0.38

≤0.07

    

18 (52.9%)

0

P5

     

≤0.07

≤-0.45

   

≤0.06

      

17 (50.9%)

0

P6

≤0.33

         

≤-0.01

   

≤-0.104

  

16 (47.1%)

0

P7

     

≤0.07

    

≤-0.01

    

>-0.02

 

16 (47.1%)

0

P8

     

≤0.07

 

>-0.295

 

≤0.033

       

16 (47.1%)

0

P9

  

>-0.42

       

≤0.06

  

≤-0.001

   

14 (41.2%)

0

P10

 

>-0.1

  

≤-0.11

     

≤-0.01

      

14 (41.2%)

0

P11

 

≤0.03

    

≤-0.45

     

≤0.19

    

13 (38.2%)

0

P12

     

≤0.07

 

>-0.295

       

>0.08

 

13 (38.2%)

0

P13

 

≤0.35

     

>-0.295

       

>0.08

 

13 (38.2%)

0

P14

           

≤0.3

 

≤-0.001

 

>0.08

 

13 (38.2%)

0

P15

 

≤-0.03

          

>-0.16, ≤0.07

    

12 (35.3%)

0

P16

     

≤0.35

>-0.96, ≤-0.7

          

10 (29.4%)

0

P17

  

>-0.22

   

≤0.055

>-0.295

         

10 (29.4%)

0

P18

  

>-0.22

  

>-0.48

 

>-0.1

         

10 (29.4%)

0

P19

  

>-0.22

 

≤0.32

 

≤0.055

          

10 (29.4%)

0

P20

  

>-0.22

    

>-0.1

  

>-0.27

      

10 (29.4%)

0

N1

 

>0.09

            

>-0.005

  

0

15 (34.1%)

N2

       

≤-0.295

   

>0.06

   

≤-0.02

 

0

15 (34.1%)

N3

    

>-0.11

      

≤0.14

   

≤-0.02

 

0

15 (34.1%)

N4

      

>0.055

        

≤-0.02

≤1.88

0

14 (31.8%)

N5

            

>0.07

>-0.001, ≤0.17

   

0

14 (31.8%)

N6

      

>0.055

        

≤-0.02

 

0

14 (31.8%)

N7

  

≤-0.22

       

>0.06

   

>-0.005

  

0

14 (31.8%)

N8

      

>0.055

        

≤-0.02

 

0

14 (31.8%)

N9

 

>0.09

            

>-0.005

 

>-0.083

0

14 (31.8%)

N10

         

>0.09

     

>-0.12, ≤0.08

 

0

13 (29.5%)

N11

   

>-0.03

       

>0.06, ≤0.14

     

0

13 (29.5%)

N12

   

>0.077

 

≤0.35

>0.055

          

0

13 (29.5%)

N13

   

>0.077

    

≤0.34

      

≤-0.0213

 

0

13 (29.5%)

N14

  

≤-0.22

 

≤0.18

 

>0.055

          

0

13 (29.5%)

N15

≤0.21

  

>0.077

           

≤-0.0213

 

0

12 (27.3%)

N16

       

≤-0.49

       

>-0.1207

≤1.877

0

12 (27.3%)

N17

           

>0.06, ≤0.14

   

≤-0.0213

 

0

12 (27.3%)

N18

           

≤0.22

   

>-0.12, ≤-0.02

 

0

12 (27.3%)

N19

 

≤0.16

≤-0.42

   

>-0.197

          

0

12 (27.3%)

N20

     

>-0.204

>-0.197

   

>0.13

      

0

11 (25.0%)

  1. LAD, logical analysis of data