Y-box binding protein-1 serine 102 is a downstream target of p90 ribosomal S6 kinase in basal-like breast cancer cells
© Stratford et al.; licensee BioMed Central Ltd. 2008
Received: 26 May 2008
Accepted: 27 November 2008
Published: 27 November 2008
Basal-like breast cancers (BLBC) frequently overexpress the epidermal growth factor receptor (EGFR) and subsequently have high levels of signaling through the MAP kinase pathway, which is thought to contribute to their aggressive behavior. While we have previously reported the expression of Y-box binding protein-1 (YB-1) in 73% of BLBC, it is unclear whether it can be regulated by a component of the MAP kinase signaling pathway. Phosphorylation of YB-1 at the serine 102 residue is required for transcriptional activation of growth-enhancing genes, such as EGFR. Using Motifscan we identified p90 ribosomal S6 kinase (RSK) as a potential candidate for activating YB-1.
Inhibition of RSK1 and RSK2 was achieved using siRNA and the small molecule SL0101. RSK1, RSK2, activated RSK and kinase-dead RSK were expressed in HCC1937 cells. Kinase assays were performed to illustrate direct phosphorylation of YB-1 by RSK. The impact of inhibiting RSK on YB-1 function was measured by luciferase assays and chromatin immunoprecipitation.
Using an in vitro kinase assay, RSK1 and RSK2 were shown to directly phosphorylate YB-1. Interestingly, they were more effective activators of YB-1 than AKT or another novel YB-1 kinase, PKCα. Phosphorylation of YB-1 (serine 102 residue) is blocked by inhibition of the MAP kinase pathway or by perturbing RSK1/RSK2 with siRNA or SL0101. In immortalized breast epithelial cells where RSK is active yet AKT is not, YB-1 is phosphorylated. Supporting this observation, RSK2-/- mouse embryo fibroblasts lose the ability to phosphorylate YB-1 in response to epidermal growth factor. This subsequently interfered with the ability of YB-1 to regulate the expression of EGFR. The RSK inhibitor SL0101 decreased the ability of YB-1 to bind the promoter, transactivate and ultimately reduce EGFR expression. In concordance with these results the expression of constitutively active RSK1 increased YB-1 phosphorylation, yet the kinase-dead RSK did not.
We therefore conclude that RSK1/RSK2 are novel activators of YB-1, able to phosphorylate the serine 102 residue. This provides a newly described mechanism whereby YB-1 is activated in breast cancer. This implicates the EGFR/RSK/YB-1 pathway as an important component of BLBC, providing an important opportunity for therapeutic intervention.
Basal-like breast cancers (BLBC) are clinically challenging cases that are not amenable to current targeted therapies due to the absence of estrogen receptor or HER-2 expression. Treatment therefore depends on aggressive chemotherapy, yet relapse rates and overall survival are poor. Identification of potential therapeutic targets is an ongoing challenge.
Y-box binding protein-1 (YB-1) is an oncogenic transcription/translation factor that is overexpressed in a number of cancer types, including breast cancer [1, 2], prostate cancer , bone cancer , lung cancer [5, 6], colon cancer , muscle cancer  and, most recently, pediatric brain tumours . In particular, we have shown YB-1 to be expressed in a high proportion of BLBC , where it is associated with high rates of relapse . Overexpression of YB-1 in breast cancer cells results in an increase in monolayer and enhanced anchorage independent growth . Further, a study by Bergmann and colleagues demonstrated that targeted expression of YB-1 in the mammary gland of mice resulted in tumour formation with 100% penetrance . Conversely, we find that suppressing YB-1 using RNA interference inhibits tumour cell growth in vitro  and in vivo . The role of YB-1 in promoting growth of breast cancer cells stems from its original identification as a DNA binding protein, interacting with the regulatory elements of epidermal growth factor receptor (EGFR), HER-2  and c-MYC .
In the succeeding 20 years since these findings, many more growth-promoting genes have been identified as YB-1 targets, including topoisomerase II , DNA polymerase alpha and proliferating cell nuclear antigen (PCNA)  to name just a few examples. The question that arises is how YB-1 becomes activated to induce the expression of these genes so central to the development of cancer.
We previously demonstrated the importance of phosphorylation at the serine 102 residue (S102) to the functions of YB-1 [1, 2]. This site lies in the highly conserved cold-shock domain and is key for YB-1 nuclear localization and its ability to transform cells . Recent studies have provided evidence for the vital role of phosphorylation this residue plays in the binding of YB-1 to, and the regulation of, the EGFR promoter and subsequent protein production [1, 2]. In short, we have shown MCF-7 breast cancer cells overexpressing YB-1 have elevated levels of EGFR mRNA and protein . Subsequently we reported that YB-1 bound the EGFR promoter in BLBC cells in a S102 phosphorylation-dependent manner . Several studies have also implicated the importance of S102 phosphorylation in promoting translation [17, 18]. Phosphorylation of S102 is therefore important for activating the transcriptional and translational control imparted by YB-1.
We previously demonstrated that AKT binds directly to YB-1 and phosphorylates the S102 site , an observation subsequently confirmed in NIH3T3 cells . A recent study by Basaki and colleagues showed that serum stimulated YB-1 nuclear localization in ovarian cells and, further, this translocation was prevented by inhibiting AKT .
The Phosphatidylinositol-3 kinase (PI3K) pathway may not be the major contributor to growth in BLBC. EGFR is expressed in at least 50% of BLBC  and was recently used as one of five markers to identify aggressive BLBC . We previously found that, by inhibiting EGFR with Iressa, we could slow the growth of BLBC cells . Since this receptor signals through the MAP kinase pathway, we questioned whether other kinases are able to phosphorylate this key residue. We therefore took a bioinformatics approach to identify potential candidates, and determined that p90 ribosomal S6 kinase (RSK) may also phosphorylate YB-1 at S102 . RSK1 to RSK4 are members of the AGC serine/threonine superfamily of kinases  that lie downstream of the MAP kinase pathway. RSKs are a direct substrate of ERK , but also require phosphorylation by phosphoinositide-dependent protein kinase-1 (PDK-1)  and subsequent autophosphorylation steps .
The importance of RSK family members in diseases such as cancer is just being appreciated. Of the four isoforms, RSK1 and RSK2 are the most well characterized, and overexpression has been associated with multiple cancer types such as prostate cancer  and those of hematologic malignancies . Recent studies showed that RSK3 may actually be a tumour suppressor in ovarian cancer , and RSK4 differed from the other isoforms in that it was expressed at low levels and was constitutively active . In breast cancer, a small study carried out by Smith and colleagues found that both RSK1 and RSK2 expression levels were elevated in ~50% of tumours compared with control cases (n = 12 controls, n = 48 cancers) . We questioned whether RSK1 or RSK2 may play a role in BLBC because they lie in the MAP kinase pathway, which is commonly activated in this type of breast cancer due to overexpression of EGFR. In light of studies showing that RSK phosphorylates other transcription factors such as creb, c-fos  and the estrogen receptor , we contended that it may play an important role in regulating YB-1.
Materials and methods
Cell lines and reagents
The SUM149, HCC1937, MDA-MB-231 and MDA-MB-468 cells were used as models of BLBC; all are estrogen receptor negative, progesterone receptor negative and HER-2 negative . SUM149 cells were purchased from Asterand (Ann Arbor, MI, USA) and were cultured as previously described . MDA-MB-231 and MDA-MB-468 (both American Type Culture Collection, Manassas, VA, USA) cells were grown in DMEM (Gibco/Invitrogen, Burlington, ON, Canada) supplemented with 10% FBS and 100 units/ml penicillin/streptomycin. HCC1937 cells (kind donation from WD Foulkes, McGill University, QC, Canada) were cultured in RPMI-1640 media supplemented with 5% FBS, 10 mM HEPES, 4.5 g/l glucose (Sigma, Oakville, ON, Canada), 1 mM sodium pyruvate (Sigma) and 100 units/ml penicillin/streptomycin.
HTR-YB#5 (HTRY) are human mammary epithelial cells immortalized with HPV16, and express YB-1 if induced with tetracycline . These were maintained in the same media as SUM149 cells supplemented with 10 ng/ml epidermal growth factor (provided by author IMB). RSK1/RSK2 specific inhibitor SL0101 (Toronto Research Chemicals Inc., North York, ON, Canada) was dissolved in methanol [31, 36, 37], and PD098059 (Cell Signaling Technologies, Danvers, MA, USA), phorbal 12-myristate 13-acetate (PMA) (Sigma) and epidermal growth factor (EGF) were dissolved in dimethylsulfoxide (DMSO).
Growth factor stimulation and drug treatments
SUM149 cells were seeded at a density of 4 × 105 cells in a six-well plate. Cells were subsequently serum-starved for 24 hours prior to 6 hours treatment with vehicle, PD098059 (20 μM) or SL0101 (50 μM). Treated cells were stimulated with the following growth factors for 15 minutes before harvesting; 5% FBS/Ham's/F12 (serum stimulation), EGF (25 ng/ml) and PMA (50 ng/ml), lysed in egg lysis buffer (ELB) and subjected to western blot analysis . In all other experiments, HCC1937, MDA-MB-231 and HTRY cells were treated with 100 μM SL0101 and the SUM149 cells with 50 μM for 6 hours. The experiment was performed three times.
Protein extraction and western blot analysis
Protein was extracted from log-growing cells in ELB , supplemented with protease and phosphatase inhibitors, and quantified using the Bradford assay (Biorad, Hercules, CA, USA). Immunoblotting was performed as previously described . Specific proteins were detected using the following antibodies: EGFR, 1:1,000 (Stressgen, San Diego, CA, USA); ERK, 1:1,000 (p44/42 MAP kinase; Cell Signaling Technology, Danvers, MA, USA); RSK1, 1:1,000 (Santa Cruz Biotechnology, Santa Cruz, CA, USA); RSK2, 1:500 (Santa Cruz Biotechnology); YB-1, 1:2,000 (Abcam, Cambridge, MA, USA); P-ERK, 1:500 (Cell Signaling Technology); P-RSKS380, 1:1,000 (Cell Signaling Technology); P-YB-1S102, 1:1,500 (Cell Signaling Technology, Danvers, MA, USA); Vinculin, 1:1,000 (Upstate, Temecula, CA, USA); and Pan-actin, 1:1,000 (Cell Signaling Technology). Densitometry was performed where appropriate.
RSK/AKT kinase assay
A synthetic peptidomimetic of the YB-1 S102 region was manufactured by Sigma with the sequence PRKYLRSVG-COOH. Kinase assays for RSK1, RSK2, AKT1 and PKCα were carried out on the peptide and activity was compared with an optimized control target (100% activity) (SignalChem, Richmond, BC, Canada). Control target sequences were as follows: RSK, KRRRLASLR; AKT1, CKRPRAASFAE; PKC, KRREILSRRPSYR.
The kinase assay reactions consisted of active protein kinase (250 ng/assay), substrate (optimized, YB-1 peptide or assay buffer) (40 μM), radiolabeled 33P-ATP (50 μM in kinase assay buffer; 25 mM MOPS, 12.5 mM β-glycerol phosphate, 25 mM MgCl2, 5 mM ethylene glycol tetraacetic acid (EGTA), 2 mM ethylenediamine tetraacetic acid, 0.25 mM dithiothreitol) to a final volume of 25 μl. Assays were performed at 30°C for 60 minutes, and then the reaction mixture was dotted on phosphocellulose P81 paper and the radioactivity measured. Activity greater than 5% of the optimized positive control is considered highly significant.
RSK1/YB-1 kinase assay from cell lysates
MCF-7 cells stably expressing Flag-YB-1 were serum starved for 16 hours prior to being lysed in radio immunoprecipitation assay (RIPA) buffer. As described above, 500 μg lysate was precleared with protein G agarose for 2 hours. YB-1 was then immunoprecipitated from the cells by overnight incubation at 4°C with 5 μg anti-Flag M2 antibody (Sigma) followed by 2 hours of incubation with protein G agarose. Complexes were then collected by centrifugation and washed firstly in Tris-buffered saline/1% NP40 and then once in modified wash buffer (100 mM Tris, pH 7.4, 50 mM NaCl, 1.5 mM MgCl2, 1 mM ethylenediamine tetraacetic acid, 0.5% NP40). YB-1 was isolated from protein G through incubation in 0.1 M glycine, pH 3.5, for 5 min at room temperature. Kinase assays were performed for RSK1 as described above.
Log-growing SUM149 cells were lysed in RIPA buffer supplemented with protease inhibitors. Cell lysates were subjected to a Bradford assay for quantification and 500 μg protein was used in subsequent immunoprecipitations. For YB-1 pull-down, lysates were precleared with 60 μl PrecipHen beads (previously described ) for 2 hours at 4°C with rotation, and the supernatants then incubated with IgY or chicken anti-YB-1 antibodies (5 μg) overnight at 4°C with rotation. Immunocomplexes were collected on PrecipHen beads after incubation at 4°C for 3 hours, by centrifugation. The beads were washed once with PBS/1% NP40, twice with wash buffer (100 mM Tris, pH 7.4, 100 mM NaCl, 1.5 mM MgCl2, 1 mM ethylenediamine tetraacetic acid, 0.5% NP40) and the proteins eluted by boiling in 5× loading dye for 5 minutes.
Similarly, for total RSK1/RSK2 immunoprecipitations, lysates (500 μg) were precleared with 35 μl protein G agarose for 2 hours prior to incubation with either control IgG or RSK1 or RSK2 antibodies (5 μg) (Santa Cruz Biotechnology) for 16 hours at 4°C with rotation. Immunocomplexes were retrieved through the addition of protein G agarose for 2 hours. Immunoprecipitated proteins were resolved on acrylamide gels and immunoblotted as described above. Horseradish peroxidase protein A was used as the secondary antibody to avoid detection of denatured immunoglobulins (1:2,000; Amersham Biosciences, Piscataway, NJ, USA).
RSK1 and RSK2 siRNA transfection
SUM149 cells (4 × 105/well) were transfected with 20 nM siRNA (Qiagen, Mississauga, ON, Canada) using Hiperfect (Qiagen). The fast-forward protocol was followed as described by the manufacturer. RSK1 and RSK2 siRNA sequences were as previously described .
HCC1937 cells were seeded at a density of 4 × 105 in a six-well plate 24 hours prior to transfection. Cells were transfected with 2 μg plasmid DNA using 10 μl Lipofectamine 2000/well as per instructions, and were lysed at 24 hours. Plasmid constructs for RSK overexpression studies were empty vectors (pRK7 and pKH3), pKH3-avRSK1, pKH3-mRSK2, pRK7-Myr-avRSK1 and pKH3-avRSK1(K112/464R) (kinase-dead) as previously described . The experiment was carried out three times.
RSK2-/-mouse embryo fibroblasts
Wild-type and RSK2-/- mouse embryo fibroblasts (MEFs) were cultured as described previously , and were stimulated with EGF (10 ng/ml) and cell lysates collected at 5, 15, 30, 60 and 120 minutes (kind donation from Dr YY Cho, University of Minnesota, Austin, MN, USA). Two sets of samples were analyzed.
SUM149 cells were plated in six-well plates (4 × 105 cells/well) and transfected with a luciferase construct containing the first 1 kb of the EGFR promoter (pER1) (kind gift from Alfred C. Johnson US National Cancer Institute, Bethesda, MD, USA – previously described in [1, 41]). Cells were transfected with a total of 1.5 μg DNA using Lipofectamine 2000 (Invitrogen). To account for transfection efficiency, cells were co-transfected with a renilla-expressing plasmid (pRL-TK, 10:1 luciferase:renilla; Promega). After 18 hours, cells were treated with vehicle or SL0101 (50 μM) for 6 hours prior to harvesting in 1 × passive lysis buffer (Promega). Luciferase activity was measured and normalized to the renilla reading from the same sample.
SUM149 cells (1 × 107 cells) were treated with vehicle, PD098059 (20 μM) or SL0101 (50 μM) for 6 hours. Crosslinks were established between protein and DNA following 15 minutes of incubation with 1% formaldehyde. Cells were washed and collected by centrifugation. Chromatin immunoprecipitation with anti-P-YB-1 antibody (gift from Dr P Mertens, University Hospital RWTH – Aachen, Aachen, Germany) was carried out as described previously [1, 2]. The resulting DNA was amplified using the EGFR2a primers (previously described [1, 2]).
YB-1 is phosphorylated by the MAP kinase pathway
RSK phosphorylates YB-1 at serine residue 102
Activity of RSK1, AKT1 and PKCα against the Y-box binding factor-1(YB-1) serine 102 residue peptide compared with the optimized positive control substrate
Activity against YB-1 peptide compared with control (%)
80 ± 1.04
78 ± 0.78
7 ± 0.7
19 ± 1.14
Inhibition of RSK functionally inactivates YB-1
Inhibition of RSK2 by siRNA in SUM149 cells (Figure 4c) led to a decrease in EGFR expression. This downregulation was mirrored in HTRY and MDA-MB-231 cells following treatment with SL0101 (Figure 4d); densitometric analysis for MDA-MB-231 gave a 35% decrease. We thereby conclude that there is a feed-forward signaling pathway in BLBC where EGF binds to the EGFR, which in turn leads to activation of the MAP kinase/RSK pathway resulting in phosphorylation of YB-1 at S102. Activated AKT and PKCα also have the ability to activate YB-1. Following this, P-YB-1S102 binds to and transactivates the EGFR gene, further fueling the growth potential of BLBC (Figure 4e).
We reveal for the first time that phosphorylation of YB-1 at the S102 location is not only carried out by the PI3K cascade but that signaling through the MAP kinase pathway can also activate this transcription factor. This is particularly relevant in BLBC, where EGFR is overexpressed in over one-half of the cases. More specifically it is the serine/threonine kinases RSK1 and RSK2 that are able to phosphorylate YB-1 at the key S102 residue in BLBC cells. Not only do we identify RSK1 and RSK2 as proteins that can directly interact and phosphorylate YB-1, but they have a much greater efficiency towards the target than AKT1 does. In fact, we also identified PKCα as having greater kinase activity towards YB-1 than AKT1, a finding that warrants future investigation. Phosphorylated RSK is also expressed in cell lines where we find abundant P-YB-1S102 and a lack of active AKT; in particular the MDA-MB-231 cells and the immortalized human mammary epithelial cells, where we were unable to detect any P-AKTS473. The RSK1/RSK2-specific inhibitor SL0101 [31, 43], as well as RSK1-targeted or RSK2-targeted siRNA, were able to reduce the phosphorylation of YB-1 at S102 even following induction by the classic tumour promoter PMA. Furthermore, we observed a reduced level of P-YB-1S102 in RSK2-/- MEFs. Finally, inhibition of RSK prevented P-YB-1S102 binding to the EGFR promoter and ultimately reduced the protein expression of this receptor tyrosine kinase.
Our data are consistent with a recent study by Hoadley and colleagues reporting that EGFR and genes encoding components of the MAP kinase pathway were associated with the basal-like subtype, while AKT1 was not . Interestingly, we found in our four BLBC cell lines that ERK2 expression was predominantly expressed over ERK1. This is in concordance with the analysis observed by Hoadley and colleagues, which shows expression of ERK2 was increased in the BLBC cluster, but this was not the case for ERK1 . It is thus conceivable that ERK2 may activate RSK and therefore YB-1 in basal-like tumours. In this context it is also of interest that we in fact find YB-1S102 to be a better substrate for RSK1 and RSK2 than AKT1. ERK2 may also directly phosphorylate YB-1 and therefore promotes its ability to transactivate target genes. In support of this idea, ERK2 promotes the transactivation of vascular endothelial growth factor by YB-1 . This occurs when ERK2 phosphorylates the N-terminal region of YB-1; the region of the protein required for gene transactivation . More recently, we identified a putative ERK phosphorylation site at serine 36 in this same region of the protein using Motif Scanner ; however, this has not been validated experimentally. While speculative at this point, if ERK does phosphorylate the transactivating domain of YB-1 this could explain why inhibiting ERK activity with PD098059 was better than SL0101 at suppressing EGFR reporter activity. In theory, inhibiting ERK2 would directly decrease phosphorylation of YB-1 at S36 at the N-terminal and indirectly block RSK from phosphorylating S102. These studies indicate that the MAP kinase pathway would have broad effects on YB-1.
While the emphasis of this study has been on BLBC, EGFR is equally important in promoting growth signals in other types of breast cancer. For example, EGFR forms heterodimers with Her-2 to engage signaling through either the MAPK or AKT pathways, which perhaps also involves RSK as well as AKT. This obviously could be important in stimulating the growth of breast cancer cells harboring amplified Her-2. Beyond breast cancer, we suspect that the relationship between RSK and YB-1 could be important in other malignancies. A study by Cho and colleagues demonstrated that RSK2 was a transforming gene, since stable expression in skin cells increased the colony number in anchorage-independent conditions . Conversely, knockdown of RSK2 reduced colony formation even in the presence of constitutively active oncogenic Ras . Other studies implicate RSK2 in transmitting the prosurvival and proliferative signals from oncogenic mutant receptor tyrosine kinase FGFR3 in multiple myeloma, resulting in cell transformation [28, 46]. Interestingly, YB-1 has been implicated in the survival and progression of multiple myeloma cells – the expression correlating with rapid proliferation and poor differentiation . We therefore postulate a model where RSK is activated through aberrant tyrosine kinase signaling, resulting in the subsequent phosphorylation of YB-1. In this way the cell will be influenced by any number of a diverse collection of genes that YB-1 has been shown to regulate, such as EGFR [1, 14], Her-2 , topoisomerase II [5, 7] and the multidrug resistance gene [48, 49]. This regulation in fact may result in a positive feedback loop in the case of genes such as EGFR.
Beyond regulating transcription, YB-1 also promotes translation, alternative splicing, RNA transport and DNA repair [17, 18, 50–52]. Whether phosphorylation of YB-1 at S102 is important for these events is not known. Interestingly, RSK itself promotes translation through several mechanisms [23, 39, 53, 54]; therefore, the role of these two proteins acting together in this process needs to be further investigated.
We conclude that RSK1 and RSK2 are able to phosphorylate YB-1S102, providing a newly described mechanism whereby this transcription factor is activated in breast cancer. In fact, RSK activates YB-1 more effectively than AKT and may therefore be the major facilitator of YB-1 function in BLBC. Interest in developing small molecules against RSK has increased over the past 2 years, and we believe this could be an important opportunity for therapeutic intervention. As RSK has never before been associated with BLBC, we therefore introduce a new mechanistic understanding and potentially a therapeutic strategy for treating this aggressive disease.
basal-like breast cancers
Dulbecco's modified eagle medium
epidermal growth factor
epidermal growth factor receptor
egg lysis buffer
extracellular signal-regulated kinases
fetal bovine serum
mouse embryo fibroblast
protein kinase C alpha
phorbal 12-myristate 13-acetate
radio immunoprecipitation assay
p90 ribosomal S6 kinase
serine 102 residue
small interfering RNA
Y-box binding factor-1.
The authors are very grateful to Dr J Sanghera and Mr R Li at SignalChem (Richmond, BC, Canada) for carrying out the RSK1, AKT1 and PKCα kinase assays on the YB-1 peptide. Research in the laboratory of SED is supported by National Cancer Institute of Canada (NCIC), the Canadian Breast Cancer Research Alliance and postdoctoral fellowships from the Canadian Breast Cancer Foundation and the Child and Family Research Institute. Research in the laboratory of PPR is supported by a Terry Fox Foundation grant obtained through the NCIC and a Career Development Award from the Human Frontier Science Program Organization. PPR holds a Canada Research Chair in Signal Transduction and Proteomics. IMB is supported by an R01.
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