Genetic variants of CYP3A5, CYP2D6, SULT1A1, UGT2B15 and tamoxifen response in postmenopausal patients with breast cancer
© Wegman et al.; licensee BioMed Central Ltd. 2007
Received: 23 August 2006
Accepted: 23 January 2007
Published: 23 January 2007
Tamoxifen therapy reduces the risk of recurrence and prolongs the survival of oestrogen-receptor-positive patients with breast cancer. Even if most patients benefit from tamoxifen, many breast tumours either fail to respond or become resistant. Because tamoxifen is extensively metabolised by polymorphic enzymes, one proposed mechanism underlying the resistance is altered metabolism. In the present study we investigated the prognostic and/or predictive value of functional polymorphisms in cytochrome P450 3A5 CYP3A5 (*3), CYP2D6 (*4), sulphotransferase 1A1 (SULT1A1; *2) and UDP-glucuronosyltransferase 2B15 (UGT2B15; *2) in tamoxifen-treated patients with breast cancer.
In all, 677 tamoxifen-treated postmenopausal patients with breast cancer, of whom 238 were randomised to either 2 or 5 years of tamoxifen, were genotyped by using PCR with restriction fragment length polymorphism or PCR with denaturing high-performance liquid chromatography.
The prognostic evaluation performed in the total population revealed a significantly better disease-free survival in patients homozygous for CYP2D6*4. For CYP3A5, SULT1A1 and UGT2B15 no prognostic significance was observed. In the randomised group we found that for CYP3A5, homozygous carriers of the *3 allele tended to have an increased risk of recurrence when treated for 2 years with tamoxifen, although this was not statistically significant (hazard ratio (HR) = 2.84, 95% confidence interval (CI) = 0.68 to 11.99, P = 0.15). In the group randomised to 5 years' tamoxifen the survival pattern shifted towards a significantly improved recurrence-free survival (RFS) among CYP3A5*3-homozygous patients (HR = 0.20, 95% CI = 0.07 to 0.55, P = 0.002). No reliable differences could be seen between treatment duration and the genotypes of CYP2D6, SULT1A1 or UGT2B15. The significantly improved RFS with prolonged tamoxifen treatment in CYP3A5*3 homozygotes was also seen in a multivariate Cox model (HR = 0.13, CI = 0.02 to 0.86, P = 0.03), whereas no differences could be seen for CYP2D6, SULT1A1 and UGT2B15.
The metabolism of tamoxifen is complex and the mechanisms responsible for the resistance are unlikely to be explained by a single polymorphism; instead it is a combination of several mechanisms. However, the present data suggest that genetic variation in CYP3A5 may predict response to tamoxifen therapy.
Tamoxifen is widely used as an endocrine treatment for patients with oestrogen-receptor (ER)-positive breast cancer. Five years of adjuvant tamoxifen therapy reduces the risk of recurrence and prolongs the survival of women with ER-positive tumours . Nevertheless, in a proportion of patients, tumours are resistant to tamoxifen, or become so, with a subsequent relapse in the disease. The mechanisms underlying the resistance are not fully understood. Because there is convincing evidence that tamoxifen is converted to anti-oestrogenic metabolites that are more potent than the mother substance, one hypothesis is that altered metabolism might contribute to inter-individual variability in serum concentrations, which in turn may influence the action on ER and the response to treatment [2–4]. Some studies have demonstrated considerable inter-individual variation in concentrations of tamoxifen metabolites both in plasma and locally in the breast [5, 6].
Several primary metabolites have been identified, including N-desmethyl-tamoxifen, 4-hydroxy-N-desmethyl-tamoxifen (endoxifen) and 4-hydroxy-tamoxifen. Whereas tamoxifen has a relatively low affinity for ER, the metabolite 4-hydroxy-tamoxifen binds with an affinity similar to that of oestradiol [7, 8]. It has also been demonstrated by studies in vitro that endoxifen exhibits a cpotency similar to that of 4-hydroxy-tamoxifen with regard to ER binding affinity, suppression of oestrogen-dependent cell growth and gene expression [2–4]. N-desmethyl-tamoxifen, in contrast, is a weak anti-oestrogen [2, 3, 7–9]. Previous studies have shown that cytochrome P450 3A4 and cytochrome P450 3A5 (CYP3A4 and CYP3A5) are the major catalysts of N-demethylation, whereas the 4-hydroxylation is predominantly supported by the cytochrome P450 2D6 (CYP2D6) [10–12]. The 4-hydroxy-tamoxifen is in equilibrium between a trans and a cis isoform, resulting in a proposed shift in property from a potent anti-oestrogen towards a significantly less potent one [13–15]. Cis-4-hydroxy-tamoxifen has in addition been reported to exist at higher concentrations than trans-4-hydroxy-tamoxifen in patients with breast cancer with acquired resistance to tamoxifen . Nishiyama and colleagues  suggested a geometrical selectivity in both the sulphation of trans-4-hydroxy-tamoxifen and the glucuronidation of cis-4-hydroxy-tamoxifen, and that these reactions were catalysed by sulphotransferase 1A1 (SULT1A1) and UDP-glucuronosyltransferase 2B15 (UGT2B15), respectively .
Polymorphisms affecting enzyme activity have been found in CYP3A5, CYP2D6, SULT1A1 and UGT2B15. The most frequent and functionally important polymorphism in the CYP3A5 gene consists of an A6986G transition within intron 3 (CYP3A5*3). This polymorphism creates an alternative splice site resulting in a frame shift and truncation of the protein [18–20]. In CYP2D6 the most common non-functional allele is CYP2D6*4. This polymorphism generates a G→A transition at the first nucleotide of exon 4 in the CYP2D6 gene, leading to a truncated non-functional gene product . Further, the most frequent polymorphism in the SULT1A1 gene is a G→A transition at nucleotide 638, defining the SULT1A1*2 allele, which is correlated with a diminished capacity to sulphate SULT1A1 substrates . Several polymorphisms have also been found within the UGT2B15 gene although only two in the coding region . One causes an amino acid shift from aspartate (UGT2B15*1) to tyrosine (UGT2B15*2) at position 85 of the UGT2B15 protein, a shift that has been associated with an increase in enzyme activity . In a previous study we investigated functional polymorphisms in CYP2D6 and SULT1A1 in 226 postmenopausal patients with breast cancer randomised to treatment with or without tamoxifen. We found a benefit of tamoxifen in carriers of the inactive allele CYP2D6*4 and a tendency in patients homozygous for SULT1A1*1, when compared with the control population . In the present study a new cohort was investigated that was both larger and included additional polymorphic enzymes involved in the metabolism of tamoxifen. The polymorphisms of CYP3A5 (CYP3A5*1 and *3), CYP2D6 (CYP2D6*1 and *4), SULT1A1 (SULT1A1*1 and *2) and UGT2B15 (UGT2B15*1 and *2) were examined in tamoxifen-treated postmenopausal patients with breast cancer, to discern whether the genotypes correlated with clinical/pathological factors and/or to the benefit of tamoxifen. We proposed that the alleles contributing to the bioactivation of tamoxifen (namely CYP3A5*1 and CYP2D6*1) as well as the alleles delaying the elimination of active metabolites (namely SULT1A1*2 and UGT2B15*1) would be favourable.
Materials and methods
Use of χ2 test to compare genotype and tumour characteristics in ER-positive patients with breast cancer
Tumour size (mm)a
CYP3A5 (n = 663)
CYP2D6 (n = 677)
SULT1A1 (n = 677)
UGT2B15 (n = 445)
DNA isolation and PCR
Fresh frozen breast tumour tissues (about 30 mg) were homogenised with a microdismembrator (B Braun, Melsungen, Germany), and genomic DNA was then isolated with the SV Genomic DNA Purification System (Promega Corporation, Madison, WI, USA). The DNA content was determined by spectrophotometry, and purified DNA was stored at -20°C before use.
The CYP3A5, CYP2D6, SULT1A1 and UGT2B15 genes were amplified by PCR in separate reactions with 50 ng of DNA. The primer sequences used in the PCR of CYP2D6 and SULT1A1 were adopted from Hanioka and colleagues  and Coughtrie and colleagues , respectively, whereas the CYP3A5 and UGT2B15 genes were amplified with forward (5'-ACCACCCAGCTTAACGAATG-3' and 5'-AGAGCTTGTTCAGAGGGGTCATGAG-3') and reverse (5'-AGCACAGGGAGTTGACCTTC-3' and 5'-AAATTCTCGATAGATGGATATATGG-3') primers, respectively. The following PCR reagents were added to a reaction volume of 20 μl: 2 mM MgCl2, 0.2 mM dNTPs, 0.5 unit of Taq DNA polymerase, and 1 μM each of forward and reverse primer in 1 × PCR buffer. The amplification was performed in a PTC-200 Peltier Thermal Cycler DNA Engine (MJ Research™ Inc, Waltham, MA, USA). An initial denaturation at 94°C for 3 minutes was followed by 38 to 40 cycles of 30 seconds at 94°C, 30 seconds of annealing at 63°C (CYP2D6, SULT1A1) or 64°C (CYP3A5, UGT2B15), and 40 seconds of extension at 72°C. An extension period of 5 minutes followed the final cycle. Fragments were then resolved by electrophoresis on a 2% (w/v) agarose gel containing 1 × TBE (89 mM Tris, 89 mM boric acid, 2 mM EDTA, pH 8.4) buffer and ethidium bromide (0.5 μg/μl). The gel was finally processed in an ultraviolet detector (Spectromics Corporation, New York, NY, USA).
Restriction fragment length polymorphism
The CYP2D6 and SULT1A1 polymorphisms were detected by using restriction enzymes. The MvaI restriction enzyme distinguishes between the CYP2D6*4 and other CYP2D6 alleles. The polymorphic allele CYP2D6*4 lacks the restriction site and is thereby retained as one fragment. The wild-type allele SULT1A1*1 has a restriction site recognised by HaeII but the polymorphic allele SULT1A1*2 does not. MvaI (10 units; Fermentas, Stockholm, Sweden) and 1.5 μl of R+ buffer (supplied by the manufacturer) were added to each tube of CYP2D6 PCR products and incubated at 37°C for 2.5 hours. The SULT1A1 PCR products were incubated with 5 units of the restriction enzyme HaeII (New England BioLabs, Beverly, MA, USA) in a 20 μl reaction mixture containing 1 × NE buffer (50 mM potassium acetate, 20 mM Tris-acetate, 10 mM magnesium acetate, 1 mM dithiothreitol, pH 7.9; New England BioLabs) supplemented with 100 μg/ml bovine serum albumin. After digestion, fragments were resolved by electrophoresis on a 3% (w/v) agarose gel containing 1 × TBE buffer and ethidium bromide (0.5 μg/μl). The gel was finally processed in an ultraviolet detector. To confirm the genotypes obtained with the restriction fragment length polymorphism method, 20 randomly selected samples were DNA sequenced and no differences in genotype were detected between the methods.
Transgenomic Wave®– nucleic acid fragment analysis system (denaturing high-performance liquid chromatography)
The Transgenomic Wave® system is based on the principle of liquid chromatography and was used to separate and detect the CYP3A5*1, *3 and UGT2B15*1, *2 alleles amplified by PCR. In this system, DNA fragments are carried by a gradient buffer (with a 2% increase in buffer per minute) through a DNASep® Cartridge under isothermal (58°C and 55.6°C, respectively) conditions, with subsequent detection by absorbance at 260 nm. The buffers used in the system consists of 0.1 M triethylammonium acetate (TEAA) and 25% (v/v) acetonitrile and 0.1 M TEAA (gradient buffer). To estimate the retention pattern for the UGT2B15 and CYP3A5 alleles, a few samples were DNA sequenced by a Thermo Sequenase Kit (Amersham Pharmacia Biotech, Uppsala, Sweden) and used as controls for each genotype.
SPSS Advanced Models™ 12.0 software was used for the statistical analyses. The χ2 test was used to show differences in the distribution of genotypes according to lymph-node status, tumour size and tumour stage. In the survival analyses, each woman's contribution to the person-years at risk began from the date of initial surgery to 1 January 2004, to the date of local or distant recurrences, whichever was earlier. The survival curves of recurrences were estimated with the Kaplan–Meier method, and the significance of differences between survival rates, for patients with different genotypes and endocrine treatment, was assessed by log-rank test. A univariate Cox proportional-hazard model was used for the estimation of the hazard ratio (HR) comparing genotype for each treatment group. Further, we performed a multivariate Cox model to adjust for the different tumour characteristics between the genotypes. We also tested whether the calculated hazard ratios were significantly different between treatment groups by using an interaction test according to the Cox model (treatment (0/1), genotype (0/1) and treatment × genotype (0/1)). Differences between groups were judged significant at confidence levels greater than 95% (P < 0.05).
The frequencies of the most common alleles were 0.92 (CYP3A5*3), 0.82 (CYP2D6*1), 0.61 (SULT1A1*1) and 0.52 (UGT2B15*2). Homozygous genotypes representing blocked or diminished enzymatic activity, CYP3A5*3, CYP2D6*4 and SULT1A1*2, were seen in 84.9%, 5.0% and 15.2% of the patients, respectively. Information on genotype and tumour characteristics is shown in Table 1. There was no significant difference in the distribution of tumour characteristics according to genotype.
Among the 677 postmenopausal patients with breast cancer, a subgroup (n = 238) was randomised to either 2 or 5 years of adjuvant tamoxifen. In the randomised group we examined whether the genotypes of CYP3A5, CYP2D6, SULT1A1 and UGT2B15 could influence the benefit of tamoxifen. When calculating the predictive value, cases with less than 2 years of follow-up time were excluded. In the statistical analyses we combined homozygous and heterozygous patients to equalise the different groups when the number of either homozygous genotype was low. Initially, we compared the RFS by genotype and by randomisation with log-rank test. Next, we estimated the HR for each genotype in the two treatment groups by using a univariate Cox proportional hazard model. Finally, we performed a multivariate Cox model adjusted for tumour characteristics such as stage, size, lymph-node involvement and tamoxifen duration. The predictive value of each genotype was further evaluated with an interaction test that compared the estimated HRs.
Hazard ratio (HR) between genotypes and randomisation calculated with the Cox proportional-hazard model
Duration of tamoxifen treatment
In a previous report of patients with breast cancer randomised to treatment with and without tamoxifen we found that genetic polymorphism in CYP2D6 and SULT1A1 may predict the benefit of tamoxifen therapy with a significantly improved disease-free survival in patients that were carriers of the CYP2D6*4 allele and/or were homozygous for the SULT1A1*1 allele . In the present investigation we examined a different and larger cohort, which also included additional polymorphic enzymes that participate in the biotransformation and elimination of tamoxifen. The study design between these investigations differs, because all patients received tamoxifen in the current study. However, of the 677 patients with breast cancer analysed, a subgroup was randomised to either 2 or 5 years of tamoxifen and an attempt was made to calculate the predictive value of the polymorphic enzymes within the randomised population (n = 238). In this population, patients were treated differently 2 years after the start of tamoxifen treatment and we therefore compared RFS for each randomised group and genotype. In the group treated with 5 years of tamoxifen we found that patients homozygous for the CYP3A5*3 variant allele had a significantly improved RFS compared with patients harbouring the CYP3A5*1 allele, and we could also see a weak tendency for a decreased risk of recurrence in patients who were carriers of the CYP2D6*4 variant allele. However, the relevance of this finding is uncertain because the number of patients was limited.
A comparison of the hazard ratios calculated for each treatment group demonstrated that the risk reduction was significantly higher in patients homozygous for the CYP3A5*3 allele than in those harbouring the CYP3A5*1 allele. This was also true when we adjusted for tumour size, tumour stage and lymph-node status. No association between the outcome of tamoxifen treatment and the genotypes of CYP2D6, SULT1A1 and UGT2B15 was found. Even if the assessment of CYP2D6 showed no significant influence in the randomised groups, there was a tendency for an advantage with 5 years of tamoxifen in carriers of at least one CYP2D6*4 allele. This is partly in agreement with our previous findings  and with those of Nowell and colleagues , who noted that the CYP2D6*4 variant seemed to be associated with a decreased risk of death or recurrence. In contrast, a recent prognostic study by Goetz and colleagues  demonstrated that patients homozygous for CYP2D6*4 had both significantly worse relapse-free time and disease-free survival but not overall survival. Because their homozygous CYP2D6*4 genotype constitutes a small number of patients, results should therefore be confirmed in a larger patient population.
Several studies have been performed on the CYP3A5 enzyme and tamoxifen, although results are controversial. The reports have focused mainly on the concentration of metabolites and its association with genotype or patient outcome. Goetz and colleagues  attempted to investigate whether CYP3A5*3 polymorphism affected patient outcome. They found no differences in relapse-free time, disease-free survival or overall survival by CYP3A5*3 genotype. Our novel findings of an improved RFS in patients homozygous for CYP3A5*3 was unexpected because this genotype represents an inactive form of the enzyme and should therefore not catalyse the formation of the primary metabolite N-desmethyl-tamoxifen, which is a precursor of the ER-active metabolite endoxifen. Tucker and colleagues  recently tested whether genetic polymorphisms in CYP3A5 were associated with altered metabolism of tamoxifen in patients with breast cancer. They found no significant differences in tamoxifen or metabolite concentration by CYP3A5*3 polymorphic status. In contrast, Jin and colleagues  suggested that subjects who carried at least one CYP3A5*1 allele had higher plasma concentrations of endoxifen than those lacking functional CYP3A5 alleles (namely *3/*3), although this was not statistically significant. In addition, several authors have proposed that CYP3A5 might be a minor contributor to the overall metabolism of CYP3A substrates [31–33]. There is also a large overlap in substrate specificity between CYP3A4 and CYP3A5, so the contribution of each CYP3A4 and CYP3A5 to total CYP3A activity could thus depend on both the drug and the individual exposed to it .
The influence of SULT1A1 in the current investigation did not reveal any conclusive implication, either in the prognostic nor in the predictive evaluation. The SULT1A1*1 allele was previously investigated by Nowell and colleagues  and by our group ; both studies indicated that the high-activity allele SULT1A1*1 contributed significantly to tamoxifen response. In a more recent study by Nowell and colleagues , genetic polymorphism in SULT1A1 and UGT2B15 was analysed in patients with breast cancer treated with or without tamoxifen. They demonstrated that genetic variation in these phase II enzymes alone or in combination was associated with overall survival and recurrence of disease. Individuals possessing both UGT2B15*2 and SULT1A1*2 alleles had a significantly increased risk of death. SULT1A1 was also investigated by Jin and colleagues , who studied whether the mean plasma concentration of tamoxifen and its metabolites was associated with genetic variants of this gene, but no such correlation was found.
Co-administration of drugs (such as selective serotonin reuptake inhibitors (SSRI)) used in patients with breast cancer has been shown to inhibit the metabolism of tamoxifen [2, 30]. This is an important issue because changes in the concentrations of active metabolites might influence the outcome of therapy; however, results are controversial [2, 30, 36, 37]. The influence from SSRI co-administration in our investigation is likely to be a minor problem because such drugs were rarely used in the current study population.
In the present study, only tumour DNA was available for genotyping and this introduces a risk for misclassification of genotypes because loss of heterozygosity and gene mutations frequently occur at several sites during carcinogenesis. However, breast tumour tissues are a mixture of stromal, inflammatory and malignant cells, and genetic lesions usually affect only a subgroup of tumour cells. Therefore the presence of normal cells and malignant cells without DNA lesions in the locus of CYP3A5, CYP2D6, SULT1A1 and UGT2B15 decreases the risk of genotype misclassification. This is also supported by the fact that allele frequencies of CYP3A5*3, CYP2D6*1, SULT1A1*2 and UGT2B15*2 in the current study population are comparable to those reported by others in Caucasian populations [18, 19, 26, 27].
Taken together, the current investigation and earlier published reports [25, 27, 35] of randomised patients connected with polymorphisms in metabolic enzymes and the outcome of tamoxifen give rise to questions about the hypothesis that genotypes contributing to the biosynthesis of the ER-active metabolites (such as endoxifen and 4-hydroxy-tamoxifen) improve the benefit of tamoxifen. Investigations by Nowell's group  and from our laboratory indicate that patients who carry the SULT1A1*1, CYP2D6*4 and CYP3A5*3 alleles, which give less ER-active metabolites, might benefit from tamoxifen [25, 27], whereas others have found the opposite, particularly regarding CYP2D6 . However, the metabolism of tamoxifen is complex and the enzymes contributing in this process can also be affected by co-prescribed drugs. The mechanisms responsible for the resistance are therefore unlikely to be explained by a single polymorphism but rather by a combination of several mechanisms. Nevertheless, the present investigation suggests that the genotype of CYP3A5 may contribute to tamoxifen response.
cytochrome P450 3A4
cytochrome P450 3A5
cytochrome P450 2D6
polymerase chain reaction
selective serotonin reuptake inhibitors
We thank Birgitta Holmlund and Lilian Ferraud at the Division of Oncology, Linköping University Hospital, for technical assistance. This study was supported by grants from the Swedish Cancer and Allergy Society, the Swedish Cancer Society, the Gunnar Nilsson Cancer Foundation and the Percy Falks Cancer Foundation.
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